• EMEN2
• EMAN2_Integration

EMEN2 - EMAN2 Integration

In addition to batch upload/download support, emen2client.py offers some basic EMAN2 synchronization capabilities. These are still being developed, but are already useful.

[irees@mbp ~/data]$ emen2client.py sync --help

Usage: emen2client.py [options] <project record ID>
                                
This program will upload EMAN2 CTF parameters, boxes, and particle sets into an EMEN2 database. Because filenames are not always globally unique, you must specify a base project that will be searched for upload targets.

If run with no options, it will check the remote database for file mappings. This is a good way to test to see if the correct mappings can be made before you attempt to commit any changes.

        

Options:
  -h, --help            show this help message and exit
  -U USERNAME, --username=USERNAME
                        Username
  -P PASSWORD, --password=PASSWORD
                        Password (Note: specifying passwords in shell commands
                        is not secure)
  -H HOST, --host=HOST  Host endpoint URI
  -C CTXID, --ctxid=CTXID
                        Valid Context ID
  --ctf                 Upload CTF Parameters
  --boxes               Upload Boxes
  --ptcls               Upload Particle Sets

Upload CTF parameters

usage help coming soon

Upload box coordinates

usage help coming soon

Upload particle stacks

usage help coming soon