Differences between revisions 39 and 42 (spanning 3 versions)
Revision 39 as of 2010-09-22 06:54:43
Size: 2280
Editor: root
Comment:
Revision 42 as of 2010-12-07 10:34:13
Size: 2002
Editor: root
Comment:
Deletions are marked like this. Additions are marked like this.
Line 21: Line 21:
Line 24: Line 23:
* [[http://ncmi.bcm.edu/ncmi/software/EMEN2/software_94|Download]] * [[http://ncmi.bcm.edu/ncmi/software/software_details?selected_software=EMEN2|Download]]
Line 32: Line 31:
* [[EMEN2/User_Guide|User Guide]]

* [[EMEN2/FAQ|FAQ]]
Line 37: Line 32:

Line 49: Line 42:
* [[EMEN2/Integration|Instrument Integration]]
Line 51: Line 43:
== EMEN2 API ==
Line 52: Line 45:
== Technical Discussions ==


* [[EMEN2/Architecture|EMEN2 Architecture]]

* [[EMEN2/Ontologies|EMEN2 Ontologies]]

* [[EMEN2/Export|Data harvesting and Export]]

* [[EMEN2/API|Public API and Web Services]]
Coming soon

EMEN2

EMEN2

An extesible, object-oriented electronic lab notebook

EMEN2 is an object oriented database and electronic lab notebook. It is designed to store scientific data in a freeform way without limiting the ability to search/mine the results. Unlike a traditional database, where the contents of each record type (table) must be defined by a database administrator and strictly adhered to, each individual record in EMEN2 can have arbitrary additional parameters outside the record definition, and all such parameters remain fully searchable.

Records in the database may be arbitrarily linked to each other, much like the web. Any record may link to an arbitrary number of other records of arbitrary type (the record's children). Many other records may link to each record (the record's parents). This permits, for example, a publication to be linked into a publications folder as well as being linked to a specific project; or a microscopy session may be a child of both the biological research project as well as the microscope the data was collected on.

EMEN2 Demo

There is a publicly accessible, read-only EMEN2 installation for accessing the NCMI's public datasets:

http://ncmi.bcm.edu/publicdata/db/home/

An overview document has been created to introduce new users to the EMEN2 web interface. It includes a number of screenshots.

Installation and Configuration

* Download

* Dependencies

* Install

* Configuration

* Maintenance and Backups

EMEN2 Client Documentation

* Command line upload/download client: emen2client.py

* EMDash microscope client

* EMAN2 Integration

EMEN2 API

Coming soon

EMEN2 (last edited 2013-04-22 20:02:57 by IanRees)