Workshop on Single Particle Reconstruction, Map Interpretation and Visualization
We apologize that the audio level on some of these presentations is quite poor, particularly the practicals, which are basically recordings of people in a big room of computers working through a tutorial with questions being answered. This is the best quality recording we have available.
EMAN08_Day1_Spkr1.mov |
Wah Chiu |
Theory |
Introduction to CryoEM and Image Formation Theory |
EMAN08_Day1_Spkr2.mov |
Steve Ludtke |
Theory |
Introduction to Single Particle Reconstruction, Model Bias |
EMAN08_Day1_Spkr3.mov |
Pawel Penczek |
Theory |
Image Similarity Metrics, 2-D Alignment and 3-D Reconstruction |
EMAN08_Day1_Spkr4.mov |
Steve Ludtke |
Practical |
Introduction to EMAN2 (outdated) |
EMAN08_Day1_Spkr5.mov |
David Woolford |
Practical |
Introduction to e2boxer (a bit outdated) |
EMAN08_Day1_Spkr6.mov |
Steve Ludtke |
Practical |
EMAN2 Tutorial and Introduction to Python |
EMAN08_Day2_Spkr1.mov |
Sriram Subrimaniam |
Research |
Strategies for structural analysis of “one-of-a-kind” biological objects |
EMAN08_Day2_Spkr2.mov |
Matt Baker |
Theory |
Interpreting Maps & Model Building |
EMAN08_Day2_Spkr3.mov |
Andrej Sali |
Theory |
Integrating Diverse Data for Structure Determination of Macromolecular Assemblies |
EMAN08_Day2_Spkr4.mov |
Ben Webb |
Practical |
Analyzing Cryo-EM maps & Modeling with Modeller |
EMAN08_Day2_Spkr5.mov |
Matt Baker |
Practical |
Building Cryo-EM based Models with Gorgon |
EMAN08_Day2_Spkr6.mov |
Steve Ludtke |
Practical |
EMAN2 Cont'd CTF |
EMAN08_Day2_Spkr7.mov |
Steve Ludtke |
Theory/Practical |
Intro to Python |
EMAN08_Day3_Spkr1.mov |
Klaus Schulten |
Research |
Cellular Systems and Processes Viewed Through Hybrid Methods of Observation and Modelling |
||EMAN08_Day3_Spkr2.mov||Mike Schmid||Theory||Aligning and Averaging 3-D Subvolumes from Electron Cryo-Tomograms||
EMAN08_Day3_Spkr3.mov |
Ian Rees |
Theory |
Introduction to the EMEN2 OODB and Electronic Notebook (outdated) |
EMAN08_Day3_Spkr4.mov |
Steve Ludtke |
Practical |
EMAN2 Tutorial Continued |
EMAN08_Day3_Spkr5.mov |
Steve Ludtke |
Practical |
Various topics including more Python Tutorial |
EMAN08_Day4_Spkr1.mov |
Helen Berman |
Theory |
What the Protein Data Bank teaches us about structural biology |
EMAN08_Day4_Spkr2.mov |
George Zhang |
Research |
Visualizing Backbone, Sidechains and Conformational Changes in Archael Chaperonin (Mm-cpn) by Single Particle Cryo-EM |
EMAN08_Day4_Spkr3.mov |
Wen Jiang |
Research |
Near atomic resolution 3-D reconstruction of viruses |
EMAN08_Day4_Spkr4.mov |
Cathy Lawson |
Practical |
Practical Introduction to Map Deposition (a bit outdated) |
EMAN08_Day4_Spkr5.mov |
Pawel Penczek |
Practical |
Introduction to SPARX |
EMAN08_Day4_Spkr6.mov |
Assorted |
Practical |
Final session |