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 * [[attachment:CHIU CryoEM Structure mining 070617.ppt||&do=get]] - Cryo Transfer movie - Cruciano, Angela Rees, Ian
 * [[attachment:Cryotransfer.mov||&do=get]] - Day 1 Lecture- Overview of Cryo EM - Wah Chiu
 * [[attachment:Cryo_Transfer.mov||&do=get]] - Cryo Transfer movie - Cruciano, Angela; Rees, Ian
 * [[attachment:Chiu handout 1 07-06-08.ppt||&do=get]] - Day 1 Lecture- Overview of Cryo EM - Wah Chiu
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''' [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_66|Workshop on Single Particle Reconstruction and Visualization: Mar. 14, 2007]] '''

'''Presentations'''
 * [[attachment:houston_march07.ppt||&do=get]] - EMdep: Deposition EM maps - Kim Henrick
 * [[attachment:Chiu_EMAN Contrast theory_07_03-15.pdf]] - Image Contrast Theory - Wah Chiu
 * [[attachment:2007-EMAN-Workshop-Wen-Jiang.pdf]] - Icosahedral Reconstruction - Jiang, Wen
 * [[attachment:EMANworkshop-Ferrin.pdf||&do=get]] - Visualization tools for complex biological structures - Tom Ferrin
 * [[attachment:chimera-eman-2007.pdf]] - Chimera Tutorial - Tom Goddard
 * [[attachment:ianrees_emen2_mar8.pdf]] - EMEN2: An Extensible, Collaborative, Electronic Lab Notebook - Rees, Ian
 * [[attachment:EMAN-workshop07-AIRS.ppt||&do=get]] - VIsualizing and Analyzing CryoEM Density Maps with AIRS - Matthew Baker
 * [[attachment:EMAN_Wkshp_MFS_Handout.ppt||&do=get]] - Aligning and Averaging 3-D Subvolumes from Electron Cryo-Tomograms - Schmid, Michael
 * [[attachment:Fourier Transforms.ppt||&do=get]] - Fourier Transforms, Filtering and Convolution - Marsh, Mike
 * [[attachment:updated_Wrks_EMAN_07.pdf||&do=get]] - updated Image similariry measures and such - Pawel A. Penczek
 * [[attachment:PmvVision.pdf]] - A Brief Introduction to PMV-VIsion - Zhao, Yong; Sanner, Michel
 * [[attachment:EMAN_CM_Modeller.ppt||&do=get]] - Introduction to comparative modeling with MODELLER (final version) - Webb, Ben and Topf, Maya
 * [[attachment:EMAN_Modeller_hands_on.ppt||&do=get]] - MODELLER hands-on session (final version) - Webb, Ben and Topf, Maya
 * [[attachment:EMANDemo1.pdf]] - EMAN Practical Session Slides - Ludtke, Steven
 * [[attachment:python_intro.pdf]] - Introduction to Python - Ludtke, Steven
 * [[attachment:talk1-intro.pdf]] - Workshop Welcome and Single Particle Reconstruction Overview - Ludtke, Steven
 * [[attachment:talk2-ctf.pdf]] - CTF Correction, Resolution Measurement & Model Bias - Ludtke, Steven

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''' [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_64|CryoEM Workshop: Oct. 17, 2006]] '''

'''Presentations'''
 * [[attachment:2006Oct18CryoEMCourseCCDs.ppt||&do=get]] - Introduction To Using CCD Cameras In cryo-EM - Booth, Christopher
 * [[attachment:CHIU Handout CryoEM Rice 06-10-18.ppt||&do=get]] - CryoEM Lecture for Biophysics Course and Workshop on Oct 18 2006 - Wah Chiu
 * [[attachment:Cryo TEM from specimen prep to the microscope_Gatan Presentation_LAM1.pdf]] - Cryo TEM from specimen prep to the microscope - Linda Melanson
 * [[attachment:CryoEM_Imaging_NCMI_20061018.pdf||&do=get]] - Imaging in Cryo-electron microscopy - Brink, Jaap
 * [[attachment:Frederik.pdf]] - CryoEM of supsension - Professor Peter Frederik

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''' [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_60|Introduction to Programming for Scientists Lecture Series: Jun. 12, 2006]] '''

'''Presentations'''
 * [[attachment:lecture1.pdf]] - Lecture 1 - Simple Datatypes - Steve Ludtke
 * [[attachment:lecture2.pdf]] - Lecture 2 - Lists, Tuples and Dictionaries - Steve Ludtke
 * [[attachment:lecture3.pdf ]] - Lecture 3 - if, while, for - Steve Ludtke
 * [[attachment:lecture4.pdf]] - Lecture 4 - Review of homework and File I/O - Steve Ludtke
 * [[attachment:pycrust-20060629-1132.py||&do=get]] - Examples from review - Steve Ludtke
  * [[attachment:lecture6-examples.ppt||&do=get]] - Lecture 6 notes
  * [[attachment:test2.py||&do=get]] - Scrabble program from Lecture 6
  * [[attachment:test.py||&do=get]] - Box file scaling example from lecture 6
 * [[attachment:pycrust-20060706-1134.py||&do=get]] - Partial interactive session from lecture 6 - Steve Ludtke
 * [[attachment:pycrust-20060710-1112.py||&do=get]] - Demo session from lecture 7 - Steve Ludtke
 * [[attachment:lecture7-stdlib.pdf]] - Lecture 7 - Standard Library - Steve Ludtke
 * [[attachment:lecture8-numbers.pdf]] - Lecture 8 - Numbers and CPUs - Steve Ludtke
 * [[attachment:lecture9-external.pdf]] - Lecture 9 - External Packages - Steve Ludtke
 * [[attachment:lecture10-eman.pdf]] - Lecture 10 - EMAN & Chimera - Steve Ludtke

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''' [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_52|Visualization of Large Biomolecular Complexes: Sep. 11 - Sep. 13, 2005]] '''

'''Presentations'''
 * [[attachment:]] - Multi-Field Biomedical Visualization - Chris Johnson
 * [[attachment:EllipsoidMolecules.ppt||&do=get]] - Hierarchical Molecular Modelling with Ellipsoids - Nelson Max
 * [[attachment:Moreland_AltReps.ppt||&do=get]] - Alternative Representations for Biological Complexes - John L. Moreland
 * [[attachment:Lawson_2005_vis_workshop.ppt||&do=get]] - Visualisation of Large Biomolecular Complexes - Lawson, Cathy
 * [[attachment:SanDiego.ppt||&do=get]] - Hierarchical Molecular Modelling with Ellipsoids: long version - Nelson Max
 * [[attachment:PPInterfaces_FCazals_VLBC.pdf||&do=get]] - Revisiting the description of Protein-Protein interfaces - F. Cazals
 * [[attachment:]] - Software Components for Modeling Large Bimolecular Complexes - Michel Sanner
 * [[attachment:chimera-sep2005.pdf||&do=get]] - Exploring Large Molecular Complexes with UCSF Chimera - Tom Goddard
 * [[attachment:MBaker-visworkshop.ppt||&do=get]] - Visualization and Analysis of Macromolecular Complexes - Baker, Matthew
 * [[attachment:Varshney05.ppt||&do=get]] - Molecular Visualization: Advances and Challenges - Varshney, Amitabh
 * [[attachment:snoeyink-biomolecvis05.ppt||&do=get]] - Geometric algorithms in biomolecular visualization & analysis - Jack Snoeyink
 * [[attachment:delano_pymol.ppt||&do=get]] - Is PyMOL Ready to Handle Large Biomolecular Complexes? - DeLano, Warren L.
 * [[attachment:2005_09_12_Bajaj_Alg_Talk.pdf]] - Geometric and Signal 3D Processing and some Visualization - Bajaj, Chandra
 * [[attachment:2005_taylor_bimolecular_v2.ppt||&do=get]] - Displaying Two Intimate Surfaces, multiple scalar fields, etc - Russell M. Taylor II, Chris Weigle, Alexandra Bokinsky, David Borland, others.

 * [[attachment:vmdvlbc2005.ppt||&do=get]] - VMD: Algorithms and Methods for Visualizing Large Biomolecular Complexes - Stone, John
 * [[attachment:bio-visualization.ppt||&do=get]] - Visualization Wish lists - Vijay Reddy
 * [[attachment:NIH-Biovisualization05-Johnson.ppt||&do=get]] - Biomedical Visualization and Software Frameworks - Chris Johnson
 * [[attachment:Breakout_Implementation.doc||&do=get]] - Break out Group Implementation - All
 * [[attachment:BreakOut_Algorithms.doc||&do=get]] - Break out Group Algorithms - All
 * [[attachment:ActionItems.doc||&do=get]] - Action Items - All
 * [[attachment:Agenda_for_Vis-workshop.doc||&do=get]] - Final Final Agenda - All
 * [[attachment:2005VisPresentation.ppt||&do=get]] - Molecular Illustration from Atoms to Cells - Goodsell, David S.
 * [[attachment:VisWorkshop.ppt||&do=get]] - Software Components for Modeling Large Biomolecular Complexes - Sanner, Michel
 * [[attachment:Baker, T. Powerpoint.ppt||&do=get]] - Challenges in the Visualization, Analysis, and Interpretation of Large Macromolecular Complexes - Tim S. Baker

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''' [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_53|CryoEM Tutorial: Jul. 25 - Jul. 29, 2005]] '''

'''Presentations'''
 * [[attachment:cryoEM workshop 05_07_26.ppt||&do=get]] - Basics of CryoEM - Wah Chiu
 * [[attachment:cryo_EM-workshop_7-25-05.ppt||&do=get]] - EM grid preparation - Zongli Li
 * [[attachment:cryoEM2005_Serysheva.ppt||&do=get]] - Vitrification of biological specimen - Serysheva, Irina
 * [[attachment:2005July26_DetectingElectronsLecture.ppt||&do=get]] - Detecting Electrons: CCD vs Film - Christopher Booth
 
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NCMI Workshops: Presentations and Videos Archive

Workshop on Single Particle Reconstruction, Structural Variability and Modeling: Oct 30 - Nov 2, 2015

Presentations

Tutorials


Cryo-EM Workshop at the National University of Singapore: July 9 - July 13, 2012

Presentations


Modeling of Cryo-EM map Workshop: Jan 14 - Jan 17, 2010

Presentations


Structural & Computational Biomedical Informatics and Cryo-EM (UK): June 8 - June 12, 2009

Presentations


Workshop on Single Particle Reconstruction, Map Interpretation and Visualization: Dec 10 - Dec 13, 2008

Presentations


EMAN/Single Particle Tutorial: June 11, 2008

Presentations

  • Talk1.pdf - Introduction to Single Particle Reconstruction in EMAN1 - Steve Ludtke

  • Talk2-ctf.pdf - Introduction to Fourier Transforms and CTF Correction - Steve Ludtke

  • Demo1.pdf - Demo session containing walkthrough for EMAN1 DVD - Steve Ludtke

  • fits.pdf - FFT's Part 1 (more detailed lecture) - Steve Ludtke

  • ffts2.pdf - FFT's Part 2 (more detailed lecture) - Steve Ludtke


Grand challenges for Nanomedicine and Nanobiology: Aug 27, 2007

Presentations


CryoEM Structure Mining: June 17, 2007

Presentations


CryoEM Training Workshop: June 8, 2007

Presentations


Workshop on Single Particle Reconstruction and Visualization: Mar. 14, 2007

Presentations


CryoEM Workshop: Oct. 17, 2006

Presentations


Introduction to Programming for Scientists Lecture Series: Jun. 12, 2006

Presentations


Visualization of Large Biomolecular Complexes: Sep. 11 - Sep. 13, 2005

Presentations


CryoEM Tutorial: Jul. 25 - Jul. 29, 2005

Presentations


WorkshopPresentationsAndVideos (last edited 2016-09-30 22:08:27 by SnekaRaveendran)