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| == NCMI Workshops: Presentations and Videos == == Presentations from the Workshops == |
== NCMI Workshops: Presentations and Videos Archive == |
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| ''' NCMI Workshop on Single Particle Reconstruction, Structural Variability and Modeling ''' ''' Oct 30 - Nov 2, 2015 ''' |
''' [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_145|Workshop on Single Particle Reconstruction, Structural Variability and Modeling: Oct 30 - Nov 2, 2015]] ''' '''Presentations''' |
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'''Tutorials''' * [[attachment:EMAN2-12_Tutorial.pdf||&do=get]] * [[attachment:EMAN2-12_Tutorial2_heterogeneity.pdf||&do=get]] * Please note that e2refine_split has been improved significantly since 2.12. Suggest an update if using this method. * [[http://ncmi.bcm.edu/ncmi/software/segger/docs|Segger Tutorials]] * [[attachment:PathwalkerGorgonTutorial.pdf||&do=get]] * [[attachment:ModelOptimizationTutorial.pdf||&do=get]] * [[attachment:ModelValidationTutorial.pdf||&do=get]] ---- ''' [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_125|Cryo-EM Workshop at the National University of Singapore: July 9 - July 13, 2012]] ''' '''Presentations''' * [[attachment:emviz.pdf]] - Map Visualization with Chimera - Tom Goddard * [[attachment:CHIU CryoEM lecture NUS workshop 2012.pdf||&do=get]] - CryoEM Basics - Wah Chiu * [[attachment:Model_bias.pdf]] - Model Bias- Mini Lecture Quantitative - Steve Ludtke * [[attachment:Particle_Eval.pdf||&do=get]] - Particle Analysis (mini-lecture) - Steve Ludtke * [[attachment:EMAN2_Intro.pdf||&do=get]] - EMAN2 Introduction - Steve Ludtke * [[attachment:Single_Particle_Intro.pdf]] - Introduction to Single Particle Analysis - Steve Ludtke * [[attachment:Lu Gan NUS cryo-ET lecture.pdf]] - Cryo-ET Basics - Lu Gan * [[attachment:Slides_for_workshop3_handout_red.pdf]] - Single Particle Tomography slides/handout - Michael Schmid et al * [[attachment:Flagella01-07-10-2012_red.pdf]] - Trypanosome Flagella - Schmid, M, Koyfman AY, Gheiratmand L, Fu CJ, Khant HA, Huang D, He CY, Chiu W * [[attachment:CHIU CryoEM Modeling NUS-reduced.pdf||&do=get]] - CHIU Modeling Lecture - Wah Chiu ---- ''' [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_108|Modeling of Cryo-EM map Workshop: Jan 14 - Jan 17, 2010]] ''' '''Presentations''' * [[attachment:emviz.pdf]] - Map Visualization with Chimera - Tom Goddard * [[attachment:CHIU CryoEM lecture NUS workshop 2012.pdf||&do=get]] - CryoEM Basics - Wah Chiu * [[attachment:Model_bias.pdf]] - Model Bias- Mini Lecture Quantitative - Steve Ludtke * [[attachment:Particle_Eval.pdf||&do=get]] - Particle Analysis (mini-lecture) - Steve Ludtke * [[attachment:EMAN2_Intro.pdf||&do=get]] - EMAN2 Introduction - Steve Ludtke * [[attachment:Single_Particle_Intro.pdf]] - Introduction to Single Particle Analysis - Steve Ludtke * [[attachment:Lu Gan NUS cryo-ET lecture.pdf]] - Cryo-ET Basics - Lu Gan * [[attachment:Slides_for_workshop3_handout_red.pdf]] - Single Particle Tomography slides/handout - Michael Schmid et al * [[attachment:Flagella01-07-10-2012_red.pdf]] - Trypanosome Flagella - Schmid, M, Koyfman AY, Gheiratmand L, Fu CJ, Khant HA, Huang D, He CY, Chiu W * [[attachment:CHIU CryoEM Modeling NUS-reduced.pdf||&do=get]] - CHIU Modeling Lecture - Wah Chiu |
NCMI Workshops: Presentations and Videos Archive
Presentations
wah-introduction.pdf - Introduction to the Workshop and NCMI
ludtke-overview.pdf - Workshop Overview - Steve Ludtke
mcmullanintro.pdf - Electron Microscopes & Imaging Artifacts - Greg McMullan
penczek-alignment.pdf - 2D Alignment Theory - Pawel Penczek
ludtke-minitalks.pdf - CTF, Refinement, other topics - Steve Ludtke
baldwin-orientation.pdf - Orientation and Symmetry - Phil Baldwin
scheres-heterogeneity.pdf - Methods for Heterogeneity Analysis - Sjors Scheres
mcmullanDetector.pdf - Direct Detector Technology - Greg McMullan
pintilie.pdf - Chimera & Segger - Greg Pintilie
baker-model-building.pdf - Model Building - Matt Baker
lawson-challenges.pdf - EMDB Challenges - Cathy Lawson
Tutorials
EMAN2-12_Tutorial2_heterogeneity.pdf
- Please note that e2refine_split has been improved significantly since 2.12. Suggest an update if using this method.
Cryo-EM Workshop at the National University of Singapore: July 9 - July 13, 2012
Presentations
emviz.pdf - Map Visualization with Chimera - Tom Goddard
CHIU CryoEM lecture NUS workshop 2012.pdf - CryoEM Basics - Wah Chiu
Model_bias.pdf - Model Bias- Mini Lecture Quantitative - Steve Ludtke
Particle_Eval.pdf - Particle Analysis (mini-lecture) - Steve Ludtke
EMAN2_Intro.pdf - EMAN2 Introduction - Steve Ludtke
Single_Particle_Intro.pdf - Introduction to Single Particle Analysis - Steve Ludtke
Lu Gan NUS cryo-ET lecture.pdf - Cryo-ET Basics - Lu Gan
Slides_for_workshop3_handout_red.pdf - Single Particle Tomography slides/handout - Michael Schmid et al
Flagella01-07-10-2012_red.pdf - Trypanosome Flagella - Schmid, M, Koyfman AY, Gheiratmand L, Fu CJ, Khant HA, Huang D, He CY, Chiu W
CHIU CryoEM Modeling NUS-reduced.pdf - CHIU Modeling Lecture - Wah Chiu
Modeling of Cryo-EM map Workshop: Jan 14 - Jan 17, 2010
Presentations
emviz.pdf - Map Visualization with Chimera - Tom Goddard
CHIU CryoEM lecture NUS workshop 2012.pdf - CryoEM Basics - Wah Chiu
Model_bias.pdf - Model Bias- Mini Lecture Quantitative - Steve Ludtke
Particle_Eval.pdf - Particle Analysis (mini-lecture) - Steve Ludtke
EMAN2_Intro.pdf - EMAN2 Introduction - Steve Ludtke
Single_Particle_Intro.pdf - Introduction to Single Particle Analysis - Steve Ludtke
Lu Gan NUS cryo-ET lecture.pdf - Cryo-ET Basics - Lu Gan
Slides_for_workshop3_handout_red.pdf - Single Particle Tomography slides/handout - Michael Schmid et al
Flagella01-07-10-2012_red.pdf - Trypanosome Flagella - Schmid, M, Koyfman AY, Gheiratmand L, Fu CJ, Khant HA, Huang D, He CY, Chiu W
CHIU CryoEM Modeling NUS-reduced.pdf - CHIU Modeling Lecture - Wah Chiu