Diff for "Ws2011/Agenda"

Differences between revisions 1 and 3 (spanning 2 versions)

Mon Mar 14, 2011

Theme - Single particle reconstruction

8:00 - 8:50	Registration	Outside PGH 200
8:50 - 9:10	Opening remarks/Introduction to Workshop	PGH200	Steve Ludtke and others
9:10 - 10:00	Introduction to transmission electron microscopy	PGH200	Wah Chiu
10:00 - 10:50	Image Processing Theory	PGH200	Richard Henderson	PGH200
11:00 - 11:20	Coffee Break	PGH200 Hall
11:20 - 12:30	Tutorial 1 - Getting started with EMAN2, CTF & Class-averages	PGH232&200	Steve Ludtke
12:30 - 1:30	Lunch	PGH200 Hall
1:30 - 3:00	Tutorial 1, contd - Initial models	PGH232&200	Steve Ludtke
3:00 - 3:20	Coffee Break	PGH200 Hall
3:20 - 5:00	Tutorial 1, contd - First refinement & other issues	PGH232&200	Steve Ludtke
5:00 - 6:00	Research Lecture: Structural studies of TriC/CCT	PGH200	Yao Cong
6:00 - 9:00	Dinner - with participant short talks	PGH200

Tue Mar 15, 2011

Theme - Helices & Heterogeneity

9:00 - 10:00	IHRSR	PGH200	Ed Egelman
10:00 - 10:20	Coffee Break	PGH200 Hall
10:20 - 11:20	Identification of conformational states using resampling	PGH200	Pawel Penczek
11:30 - 12:30	Tutorial 2 - Chimera	PGH232&200	Tom Goddard
12:30 - 1:30	Lunch	PGH200 Hall
1:30 - 3:00	Tutorial 3 - Evaluating refinements, heterogeneity, etc.	PGH232&200	Steve Ludtke
3:00 - 3:15	Coffee Break	PGH200 Hall
3:15 - 5:00	Tutorial 4 - Introduction to identification of conformational states in SPARX	PGH232&200	Pawel Penczek
5:15 - 6:15	[[attachment:2_6_zhang_mmcpn.pdf\|Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM
6:30 - 9:00	Dinner	Library/Hilton

Wed, Mar 16, 2011

Theme - Related methods

8:50 - 9:15	Tutorial 5 - Quick morning tutorial session	PGH232&200	Stephen Murray
9:15 - 10:00	Single Particle Tomography	PGH200	Mike Schmid
10:10 - 10:30	Coffee Break	PGH200 Hall
10:30 - 11:00	EMDatabank.org & Data Archival	PGH200	Cathy Lawson
11:00 - 11:45	Tutorial 6 - Segmentation with Segger	PGH200&232	Greg Pintilie
11:45 - 12:45	Lunch	PGH200 Hall
12:45 - 3:00	Tutorial 5 cont'd - Frealign, multirefine, etc.	PGH200&232		Steve Ludtke & Stephen Murray
3:00 - 3:30	Coffee Break	PGH200 hall
3:30 - 5:00	Tutorial 7 - Single Particle Tomography in EMAN2	PGH200&232	Jesus Montoya & John Flanagan
5:10 - 6:10	Research Talk - Structural studies of Calcium release channels	PGH200&232	Irina Serysheva
7:00 - 9:00	Workshop Banquet at Fung’s Kitchen Bus leaves U of H at 6:30 !

Thu, Mar 17, 2011

Theme: Validation & Modeling

9:00 - 10:00	Methods for Validation of Cryo-EM Maps	PGH200	Richard Henderson
10:00 - 10:30	Coffee Break	PGH200 hall
10:30 - 11:30	Real-space Refinement of Atomic Models in DireX	PGH200/232	Gunnar Schroeder
11:30 - 12:15	The EMEN2 Electronic Notebook and OODB	PGH200/232	Ian Rees
12:15 - 1:00	Lunch	PGH200 Hall
1:00 - 2:30	Introduction to Rosetta	PGH200/232	Yao Cong
2:30 - 3:00	Coffee Break	PGH200 Hall
3:00 - 4:30	Model Building and Analysis with Gorgon	PGH200/232	Matt Baker
4:30 - 5:30	Workshop wrap-up, final discussion

Workshop Ends

Note: Wah will host a dinner for any speakers who will be around Thurs evening

-  ⇤ ← Revision 1 as of 2011-03-08 20:31:26 → 
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-||12:30 - 1:30||Lunch||Hall outside 200||
+||12:30 - 1:30||Lunch||PGH200 Hall||
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-||12:30 - 1:30||Lunch|| ||
+||12:30 - 1:30||Lunch||PGH200 Hall||
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-||'''8:50 - 9:15'''||[[attachment:3_1_murray_frealign.pdf|Quick morning tutorial session]]||'''PGH232&200'''||Stephen Murray||
+||'''8:50 - 9:15'''||[[attachment:3_1_murray_frealign.pdf|Tutorial 5 - Quick morning tutorial session]]||'''PGH232&200'''||Stephen Murray||
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-||10:30 - 11:00||[[attachment:3_3_lawson_PDB.pdf|Single Particle Tomography]]||PGH200||Cathy Lawson||
Practicals (Computer classroom & Laptops in the lecture hall) 
11:00 - 11:45	Greg Pinitilie
 Segger
11:45 - 12:45	Lunch
12:45 - 3:00	Multirefine
 EMAN2/Frealign
 Other topics	
3:00 - 3:30	Break
3:30 - 5:00	Mike Schmid/Jesus Montoya
 Single particle tomography tutorial
 

5:10 - 6:10	Research Talk
 Irina Serysheva
 Structural studies of Calcium release channels


6:30 -	Banquet at Fung’s Kitchen
 Bus leaves U of H at 6:30
+||10:30 - 11:00||[[attachment:3_3_lawson_PDB.pdf|EMDatabank.org & Data Archival]]||PGH200||Cathy Lawson||
||11:00 - 11:45||[[attachment:3_4_pintilie_segger.pdf|Tutorial 6 - Segmentation with Segger]]||PGH200&232||Greg Pintilie||
||11:45 - 12:45||Lunch||PGH200 Hall||
||12:45 - 3:00||Tutorial 5 cont'd - Frealign, multirefine, etc.||||PGH200&232||Steve Ludtke & Stephen Murray||
||3:00 - 3:30||Coffee Break||PGH200 hall||
||3:30 - 5:00||[[attachment:3_5_montoya_spt.pdf|Tutorial 7 - Single Particle Tomography in EMAN2]]||PGH200&232||Jesus Montoya & John Flanagan||
||5:10 - 6:10||[[attachment:3_6_serysheva_cachannels.pdf|Research Talk - Structural studies of Calcium release channels]]||PGH200&232||Irina Serysheva||
||7:00 - 9:00||Workshop Banquet at Fung’s Kitchen '''Bus leaves U of H at 6:30 !'''||
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+Line 50:
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+Line 53:
-Morning Lectures (Main lecture hall)
9:00 - 10:00	Richard Henderson
 Validating maps with tilt data
 Resolution
10:00 - 10:30	Break
10:30 - 11:30	Gunnar Schroeder
 DireX
+||9:00 - 10:00||[[attachment:4_1_henderson_validation.pdf|Methods for Validation of Cryo-EM Maps]]||PGH200||Richard Henderson||
||10:00 - 10:30||Coffee Break||PGH200 hall||
||10:30 - 11:30||[[attachment:4_2_schroeder_direx.pdf|Real-space Refinement of Atomic Models in DireX]]||PGH200/232||Gunnar Schroeder||
||11:30 - 12:15||[[attachment:4_3_rees_emen2.pdf|The EMEN2 Electronic Notebook and OODB]]||PGH200/232||Ian Rees||
||12:15 - 1:00||Lunch||PGH200 Hall||
||1:00 - 2:30||[[attachment:4_4_cong_rosetta.pdf|Introduction to Rosetta]]||PGH200/232||Yao Cong||
||2:30 - 3:00||Coffee Break||PGH200 Hall||
||3:00 - 4:30||[[attachment:4_5_baker_gorgon.pdf|Model Building and Analysis with Gorgon]]||PGH200/232||Matt Baker||
||4:30 - 5:30||Workshop wrap-up, final discussion||
-Line 72:
+Line 63:
-Practicals (Computer classroom & Laptops in the lecture hall) 
11:30 - 12:15	Ian Rees
 EMEN2 Tutorial and demo
12:15 - 1:00	Lunch
+'''''Workshop Ends'''''
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+Line 65:
-:00 - 2:30	Yao Cong
 Rosetta Introduction and Tutorial	
2:30 - 3:00	Break
3:00 - 4:30	Matt Baker 
 Gorgon Introduction and Tutorial

4:30 - 5:30	Workshop wrap-up, final issues

workshop ends

6:00 	Speaker dinner
+''Note: Wah will host a dinner for any speakers who will be around Thurs evening''