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Mon Mar 14, 2011 == NCMI Workshop on Single Particle Reconstruction, Validation and Analysis ==
=== March 14 - 17, 2011 ===
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Theme - Single particle reconstruction This page contains the workshop schedule, and will contain the PDFs of each of the presentations at the
workshop. Speakers are asked to upload their presentations sometime before the beginning of their talk
(preferably as far in advance as possible).

'''Mon Mar 14, 2011'''

''Theme - Single particle reconstruction''
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'''Tue Mar 15, 2011'''
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Tue Mar 15, 2011

Theme - Helices & Heterogeneity
''Theme - Helices & Heterogeneity''
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'''Wed, Mar 16, 2011'''
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Wed, Mar 16, 2011

Theme - Related methods
''Theme - Related methods''
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'''Thu, Mar 17, 2011'''
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Thu, Mar 17, 2011

Theme: Validation & Modeling
''Theme: Validation & Modeling''
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NCMI Workshop on Single Particle Reconstruction, Validation and Analysis

March 14 - 17, 2011

This page contains the workshop schedule, and will contain the PDFs of each of the presentations at the workshop. Speakers are asked to upload their presentations sometime before the beginning of their talk (preferably as far in advance as possible).

Mon Mar 14, 2011

Theme - Single particle reconstruction

8:00 - 8:50

Registration

Outside PGH 200

8:50 - 9:10

Opening remarks/Introduction to Workshop

PGH200

Dr. Steve Ludtke

9:10 - 10:00

Introduction to transmission electron microscopy

PGH200

Dr. Wah Chiu

10:00 - 10:50

Image processing theory

PGH200

Dr. Richard Henderson

11:00 - 11:20

Coffee Break

11:20 - 12:30

Tutorial 1 - Getting started with EMAN2, CTF & class-averages

PGH232&200

Dr. Steve Ludtke

12:30 - 1:30

Lunch

1:30 - 3:00

Tutorial 1, contd - Initial models

PGH232&200

Dr. Steve Ludtke

3:00 - 3:20

Coffee Break

3:20 - 5:00

Tutorial 1, contd - First refinement & other issues

PGH232&200

Dr. Steve Ludtke

5:00 - 6:00

Research Lecture: Structural studies of TriC/CCT

PGH200

Dr. Yao Cong

6:00 - 9:00

Dinner onsite - with participant short talks

PGH200

Tue Mar 15, 2011

Theme - Helices & Heterogeneity

9:00 - 10:00

Helical filaments, heterogeneity and polymorphisms

PGH200

Dr. Edward Egelman

10:00 - 10:20

Coffee Break

10:20 - 11:20

Identification of conformational states using resampling

PGH200

Dr. Pawel Penczek

11:30 - 12:30

Tutorial 2 - Chimera

PGH232&200

Tom Goddard

12:30 - 1:30

Lunch

1:30 - 3:00

Tutorial 3 - Evaluating refinements, heterogeneity, etc.

PGH232&200

Dr. Steve Ludtke

3:00 - 3:15

Coffee Break

3:15 - 5:00

Tutorial 4 - Introduction to identification of conformational states in SPARX

PGH232&200

Dr. Pawel Penczek

5:15 - 6:15

Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM

PGH200

Dr. Junjie (George) Zhang

6:30 - 9:00

Dinner

UH Library

Wed, Mar 16, 2011

Theme - Related methods

8:50 - 9:15

Tutorial 5 - Quick morning tutorial session

PGH232&200

Stephen Murray

9:15 - 10:00

Single particle tomography

PGH200

Dr. Mike Schmid

10:10 - 10:30

Coffee Break

10:30 - 11:00

EMDatabank.org & Data Archival

PGH200

Dr. Cathy Lawson

11:00 - 11:45

Tutorial 6 - Segmentation with Segger

PGH200&232

Dr. Greg Pintilie

11:45 - 12:45

Lunch

12:45 - 3:00

Tutorial 5 cont'd - Frealign, multirefine, etc.

PGH200&232

Dr. Steve Ludtke & Stephen Murray

3:00 - 3:30

Coffee Break

3:30 - 5:00

Tutorial 7 - Single Particle Tomography in EMAN2

PGH200&232

Jesus Montoya & Dr. John Flanagan

5:10 - 6:10

Research Talk - Structural studies of Calcium release channels

PGH200&232

Dr. Irina Serysheva

7:00 - 9:00

Workshop Banquet Bus leaves U of H at 6:30 !

Fung’s Kitchen

Thu, Mar 17, 2011

Theme: Validation & Modeling

9:00 - 10:00

Methods for Validation of Cryo-EM Maps

PGH200

Dr. Richard Henderson

10:00 - 10:30

Coffee Break

10:30 - 11:30

Real-space Refinement of Atomic Models in DireX

PGH200/232

Dr. Gunnar Schroeder

11:30 - 12:15

The EMEN2 Electronic Notebook and OODB

PGH200/232

Ian Rees

12:15 - 1:00

Lunch

1:00 - 2:30

Introduction to Rosetta

PGH200/232

Dr. Yao Cong

2:30 - 3:00

Coffee Break

3:00 - 4:30

Model Building and Analysis with Gorgon

PGH200/232

Dr. Matt Baker

4:30 - 5:30

Workshop wrap-up, final discussion

Workshop Ends

Note: Wah will host a dinner for any speakers who will be around Thurs evening

Ws2011/Agenda (last edited 2011-04-10 05:04:52 by SteveLudtke)