Mon Mar 14, 2011

Theme - Single particle reconstruction

8:00 - 8:50

Registration

Outside PGH 200

8:50 - 9:10

Opening remarks/Introduction to Workshop

PGH200

Dr. Steve Ludtke

9:10 - 10:00

Introduction to transmission electron microscopy

PGH200

Dr. Wah Chiu

10:00 - 10:50

Image processing theory

PGH200

Dr. Richard Henderson

11:00 - 11:20

Coffee Break

11:20 - 12:30

Tutorial 1 - Getting started with EMAN2, CTF & class-averages

PGH232&200

Dr. Steve Ludtke

12:30 - 1:30

Lunch

1:30 - 3:00

Tutorial 1, contd - Initial models

PGH232&200

Dr. Steve Ludtke

3:00 - 3:20

Coffee Break

3:20 - 5:00

Tutorial 1, contd - First refinement & other issues

PGH232&200

Dr. Steve Ludtke

5:00 - 6:00

Research Lecture: Structural studies of TriC/CCT

PGH200

Dr. Yao Cong

6:00 - 9:00

Dinner onsite - with participant short talks

PGH200

Tue Mar 15, 2011

Theme - Helices & Heterogeneity

9:00 - 10:00

Helical filaments, heterogeneity and polymorphisms

PGH200

Dr. Edward Egelman

10:00 - 10:20

Coffee Break

10:20 - 11:20

Identification of conformational states using resampling

PGH200

Dr. Pawel Penczek

11:30 - 12:30

Tutorial 2 - Chimera

PGH232&200

Tom Goddard

12:30 - 1:30

Lunch

1:30 - 3:00

Tutorial 3 - Evaluating refinements, heterogeneity, etc.

PGH232&200

Dr. Steve Ludtke

3:00 - 3:15

Coffee Break

3:15 - 5:00

Tutorial 4 - Introduction to identification of conformational states in SPARX

PGH232&200

Dr. Pawel Penczek

5:15 - 6:15

Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM

PGH200

Dr. Junjie (George) Zhang

6:30 - 9:00

Dinner

UH Library

Wed, Mar 16, 2011

Theme - Related methods

8:50 - 9:15

Tutorial 5 - Quick morning tutorial session

PGH232&200

Stephen Murray

9:15 - 10:00

Single particle tomography

PGH200

Dr. Mike Schmid

10:10 - 10:30

Coffee Break

10:30 - 11:00

EMDatabank.org & Data Archival

PGH200

Dr. Cathy Lawson

11:00 - 11:45

Tutorial 6 - Segmentation with Segger

PGH200&232

Dr. Greg Pintilie

11:45 - 12:45

Lunch

12:45 - 3:00

Tutorial 5 cont'd - Frealign, multirefine, etc.

PGH200&232

Dr. Steve Ludtke & Stephen Murray

3:00 - 3:30

Coffee Break

3:30 - 5:00

Tutorial 7 - Single Particle Tomography in EMAN2

PGH200&232

Jesus Montoya & Dr. John Flanagan

5:10 - 6:10

Research Talk - Structural studies of Calcium release channels

PGH200&232

Dr. Irina Serysheva

7:00 - 9:00

Workshop Banquet Bus leaves U of H at 6:30 !

Fung’s Kitchen

Thu, Mar 17, 2011

Theme: Validation & Modeling

9:00 - 10:00

Methods for Validation of Cryo-EM Maps

PGH200

Dr. Richard Henderson

10:00 - 10:30

Coffee Break

10:30 - 11:30

Real-space Refinement of Atomic Models in DireX

PGH200/232

Dr. Gunnar Schroeder

11:30 - 12:15

The EMEN2 Electronic Notebook and OODB

PGH200/232

Ian Rees

12:15 - 1:00

Lunch

1:00 - 2:30

Introduction to Rosetta

PGH200/232

Dr. Yao Cong

2:30 - 3:00

Coffee Break

3:00 - 4:30

Model Building and Analysis with Gorgon

PGH200/232

Dr. Matt Baker

4:30 - 5:30

Workshop wrap-up, final discussion

Workshop Ends

Note: Wah will host a dinner for any speakers who will be around Thurs evening