This program is for performing simple operations on PDB files

procpdb.py <infile> [<outfile>] [rot=<alt,az,phi>] [trans=<dx,dy,dz>] [posttrans=<dx,dy,dz>] [centeratoms] [centerelec] [centermass] [animorph=<n>,<apix>,<vecfile>] [apix=<A/pix>] [split] [include=[helix,sheet,other] [chains=<chainltr>]

|| <infile>||Input file|| ||[<outfile>]||Output file|| ||[rot=<alt,az,phi>]||Rotation in EMAN convention|| ||[trans=<dx,dy,dz>]||Translate (before rotation)|| ||[posttrans=<dx,dy,dz>]||Post-translation|| ||[centeratoms]||Center based on the mean atom position|| ||[centerelec]||Center based on the center of electron charge|| ||[centermass]||Center based on the center of mass|| ||[animorph=<n>,<apix>,<vecfile>]||This will use a morph vector file (segment3d) to morph atom positions|| ||[apix=<A/pix>]||multiply trans by apix|| ||[split]||Split file at TER records. Results imperfect.|| ||[include=[helix,sheet,other]||[include=[helix,sheet,other]]|| ||[chains=<chainltr>]||eg - “ABO”, for extracting a portion of a complex||

Simple program for manipulating PDB files in the EMAN convention

EMAN Manual page, generated Mon Jan 8 17:35:59 2007