eman2:eman1to2translation
This is a mapping of EMAN1 EMData methods to EMAN2 so old scripts can be updated.
| EMAN | EMAN2 | ||
| .calcCCF | .calc_ccf | ||
| .copy | .copy | ||
| .doFFT | .do_fft or .do_fft_inplace | ||
| .EMData | .EMData | ||
| .gimmeFFT | Not necessary, no FFT caching | ||
| .Mean | .get_attr(“mean”) or .get_attr_dict()mean | ||
| .!MinLoc | .calc_min_index or .calc_min_location() | ||
| .readImage | .read_image or EMData(path,n) constructor | ||
| .realFilter | .process(“threshold.binary”) | ||
| .ri2ap | .ri2ap | ||
| .rotateAndTranslate | .rot_scale_trans, .rot_scale_trans2D, others. see Transform class | ||
| .setRAlign | no equivalent | ||
| .setSize | .set_size | ||
| .setTAlign | no equivalent | ||
| .setValueAt | .set_value_at | ||
| .Sigma | see .Mean() | ||
| .toCorner | .process_inplace(“xform.phaseorigin.tocorner”) | ||
| .update | .update | ||
| .valueAt | .get_value_at | ||
| .writeImage | .write_image | ||
| .x(y)(z)Size | .get_(x,y,z)size | ||
| .zero | .to_zero | ||
| .set_complex, note new constructor EMData(nx,ny,nz,real=1) if real=0 image will be complex | |||
| .set_ri | |||
| .do_ift |
eman2/eman1to2translation.txt · Last modified: by steveludtke