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NCMI Workshop on Single Particle Reconstruction, Validation and Analysis

March 14 - 17, 2011

This page contains the workshop schedule, and will contain the PDFs of each of the presentations at the workshop. Speakers are asked to upload their presentations sometime before the beginning of their talk (preferably as far in advance as possible).

The data and software required for participation in the tutorial sessions can be found at: Workshop2011.

Information on the location of the workshop and where to park is here: Ws2011/Location

The main workshop page is here: http://ncmi.bcm.edu/ncmi/events/workshops/workshops_114

Note that PGH216 is an overflow room for the lectures in case the lecture hall becomes full for the talks. During the tutorial sessions, there will be plenty of seats in PGH232.

Mon Mar 14, 2011

Theme - Single particle reconstruction

8:00 - 8:50

Registration

Outside PGH 232

8:50 - 9:10

Opening remarks/Introduction to Workshop

PGH232

Dr. Steve Ludtke

9:10 - 10:00

Cryo-EM Essentials

PGH232

Dr. Wah Chiu

10:00 - 10:50

Image processing theory

PGH232

Dr. Richard Henderson

11:00 - 11:20

Coffee Break

11:20 - 12:30

Tutorial 1 - Getting started with EMAN2, CTF & class-averages

PGH232&200

Dr. Steve Ludtke

Tutorial 1 - Slides from presentation

12:30 - 1:30

Lunch

1:30 - 3:00

Tutorial 1, contd - Initial models

PGH232&200

Dr. Steve Ludtke

3:00 - 3:20

Coffee Break

3:20 - 5:00

Tutorial 1, contd - First refinement & other issues

PGH232&200

Dr. Steve Ludtke

5:00 - 6:00

Research Lecture: Structural studies of TriC/CCT

PGH232

Dr. Yao Cong

6:00 - 9:00

Dinner onsite - with participant short talks

PGH232

Tue Mar 15, 2011

Theme - Helices & Heterogeneity

9:00 - 10:00

Helical filaments, heterogeneity and polymorphisms

PGH232

Dr. Edward Egelman

10:00 - 10:20

Coffee Break

10:20 - 11:20

Identification of conformational states using resampling

PGH232

Dr. Pawel Penczek

11:30 - 12:30

Tutorial 2 - Chimera

PGH232&200

Tom Goddard

12:30 - 1:30

Lunch

1:30 - 3:00

Tutorial 3 - Evaluating refinements, heterogeneity, etc.

PGH232&200

Dr. Steve Ludtke

Tutorial 3 - Presentation slides for tutorial session

3:00 - 3:15

Coffee Break

3:15 - 5:00

Tutorial 4 - Introduction to identification of conformational states in SPARX

PGH232&200

Dr. Pawel Penczek

5:15 - 6:15

Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM

PGH232

Dr. Junjie (George) Zhang

6:30 - 9:00

Dinner

UH Library

Wed, Mar 16, 2011

Theme - Related methods

8:50 - 9:15

Tutorial 5 - Quick morning tutorial session

PGH232&200

Stephen Murray

9:15 - 10:00

Single particle tomography

PGH232

Dr. Mike Schmid

10:10 - 10:30

Coffee Break

10:30 - 11:00

EMDatabank.org & Data Archival Tutorial/Guide

PGH232

Dr. Cathy Lawson

11:00 - 11:45

Tutorial 6 - Segmentation with Segger

PGH200&232

Dr. Greg Pintilie

11:45 - 12:45

Lunch

12:45 - 3:00

Tutorial 5 cont'd - Frealign, multirefine, etc.

PGH200&232

Stephen Murray & Dr. Steve Ludtke

3:00 - 3:30

Coffee Break

3:30 - 5:00

Tutorial 7 - Single Particle Tomography in EMAN2 Short PPT intro

PGH200&232

Jesus Galaz & Dr. John Flanagan

5:10 - 6:10

Research Talk - Structural studies of Calcium release channels

PGH232

Dr. Irina Serysheva

7:00 - 9:00

Workshop Banquet Bus leaves U of H at 6:30 !

Fung’s Kitchen

Thu, Mar 17, 2011

Theme: Validation & Modeling

9:00 - 10:00

Methods for Validation of Cryo-EM Maps

PGH232

Dr. Richard Henderson

10:00 - 10:30

Coffee Break

10:30 - 11:30

Tutorial 8: Real-space Refinement of Atomic Models in DireX

PGH200/232

Dr. Gunnar Schroeder

11:30 - 12:15

Tutorial 9: The EMEN2 Electronic Notebook and OODB

PGH200/232

Ian Rees

12:15 - 1:00

Lunch

1:00 - 2:30

Tutorial 10: Introduction to Rosetta

PGH200/232

Dr. Yao Cong

2:30 - 3:00

Coffee Break

3:00 - 4:30

Tutorial 11: Model Building and Analysis with Gorgon

PGH200/232

Dr. Matt Baker

4:30 - 5:30

Workshop wrap-up, final discussion

Workshop Ends

Ws2011/Agenda (last edited 2011-04-10 05:04:52 by SteveLudtke)