| aang | EMAN::PointArray | private |
| adihed | EMAN::PointArray | private |
| adist | EMAN::PointArray | private |
| align_2d(PointArray *to, float max_dist) | EMAN::PointArray | |
| angc | EMAN::PointArray | private |
| apix | EMAN::PointArray | private |
| bfactor | EMAN::PointArray | private |
| calc_helicity(vector< double > pts) | EMAN::PointArray | |
| calc_total_length() | EMAN::PointArray | |
| calc_transform(PointArray *p) | EMAN::PointArray | |
| center_to_zero() | EMAN::PointArray | |
| centx | EMAN::PointArray | private |
| centy | EMAN::PointArray | private |
| centz | EMAN::PointArray | private |
| construct_helix(int start, int end, float phs, float &score, int &dir) | EMAN::PointArray | |
| copy() | EMAN::PointArray | |
| delete_point(int id) | EMAN::PointArray | |
| Density2PointsArrayAlgorithm enum name | EMAN::PointArray | |
| dihed0 | EMAN::PointArray | private |
| dihedc | EMAN::PointArray | private |
| dist0 | EMAN::PointArray | private |
| distc | EMAN::PointArray | private |
| distmx(int sortrows=0) | EMAN::PointArray | |
| distpenc | EMAN::PointArray | private |
| do_filter(vector< float > pts, float *ft, int num) | EMAN::PointArray | |
| do_pca(int start, int end) | EMAN::PointArray | |
| fit_helix(EMData *pmap, int minlength, float mindensity, vector< int > edge, int twodir, size_t minl) | EMAN::PointArray | |
| get_bounding_box() | EMAN::PointArray | |
| get_center() | EMAN::PointArray | |
| get_number_points() const | EMAN::PointArray | |
| get_points() | EMAN::PointArray | |
| get_points_array() | EMAN::PointArray | |
| get_value_at(int i) | EMAN::PointArray | |
| get_vector_at(int i) | EMAN::PointArray | |
| gradx | EMAN::PointArray | private |
| grady | EMAN::PointArray | private |
| gradz | EMAN::PointArray | private |
| KMEANS enum value | EMAN::PointArray | |
| map | EMAN::PointArray | private |
| map2d | EMAN::PointArray | private |
| mapc | EMAN::PointArray | private |
| mask(double rmax, double rmin=0.0) | EMAN::PointArray | |
| mask_asymmetric_unit(const string &sym) | EMAN::PointArray | |
| match_points(PointArray *to, float max_miss=-1.0) | EMAN::PointArray | |
| merge_to(PointArray &pa, float thr) | EMAN::PointArray | |
| mindistc | EMAN::PointArray | private |
| n | EMAN::PointArray | private |
| oldshifts | EMAN::PointArray | private |
| operator=(PointArray &pa) | EMAN::PointArray | |
| opt_from_proj(const vector< EMData * > &proj, float pixres) | EMAN::PointArray | |
| pdb2mrc_by_nfft(int map_size, float apix, float res) | EMAN::PointArray | |
| pdb2mrc_by_summation(int map_size, float apix, float res, int addpdbbfactor) | EMAN::PointArray | |
| PEAKS_DIV enum value | EMAN::PointArray | |
| PEAKS_SUB enum value | EMAN::PointArray | |
| PointArray() | EMAN::PointArray | |
| PointArray(int nn) | EMAN::PointArray | explicit |
| points | EMAN::PointArray | private |
| projection_by_nfft(int image_size, float apix, float res=0) | EMAN::PointArray | |
| projection_by_summation(int image_size, float apix, float res) | EMAN::PointArray | |
| read_ca_from_pdb(const char *file) | EMAN::PointArray | |
| read_from_pdb(const char *file, const vector< int > &lines=vector< int >()) | EMAN::PointArray | |
| remove_helix_from_map(EMData *m, vector< float > hlxid) | EMAN::PointArray | |
| replace_by_summation(EMData *image, int i, Vec3f vec, float amp, float apix, float res) | EMAN::PointArray | |
| reverse_chain() | EMAN::PointArray | |
| right_transform(const Transform &transform) | EMAN::PointArray | |
| save_pdb_with_helix(const char *file, vector< float > hlxid) | EMAN::PointArray | |
| save_to_pdb(const char *file) | EMAN::PointArray | |
| set_from(vector< float >) | EMAN::PointArray | |
| set_from(PointArray *source, const string &sym="", Transform *transform=0) | EMAN::PointArray | |
| set_from(double *source, int num, const string &sym="", Transform *transform=0) | EMAN::PointArray | |
| set_from_density_map(EMData *map, int num, float thresh, float apix, Density2PointsArrayAlgorithm mode=PEAKS_DIV) | EMAN::PointArray | |
| set_number_points(size_t nn) | EMAN::PointArray | |
| set_points_array(double *p) | EMAN::PointArray | |
| set_vector_at(int i, Vec3f vec, double value) | EMAN::PointArray | |
| set_vector_at(int i, vector< double >) | EMAN::PointArray | |
| sim_add_point_double() | EMAN::PointArray | |
| sim_add_point_one() | EMAN::PointArray | |
| sim_descent(int i) | EMAN::PointArray | |
| sim_minstep(double maxshift) | EMAN::PointArray | |
| sim_minstep_seq(double meanshift) | EMAN::PointArray | |
| sim_pointpotential(double dist, double ang, double dihed) | EMAN::PointArray | inline |
| sim_potential() | EMAN::PointArray | |
| sim_potentiald(int ind) | EMAN::PointArray | |
| sim_potentialdxyz(int i, double dx, double dy, double dz) | EMAN::PointArray | |
| sim_printstat() | EMAN::PointArray | |
| sim_rescale() | EMAN::PointArray | |
| sim_set_pot_parms(double pdist0, double pdistc, double pangc, double pdihed0, double pdihedc, double pmapc, EMData *pmap, double pmindistc, double pdistpenc) | EMAN::PointArray | |
| sim_updategeom() | EMAN::PointArray | |
| sort_by_axis(int axis=1) | EMAN::PointArray | |
| transform(const Transform &transform) | EMAN::PointArray | |
| zero() | EMAN::PointArray | |
| ~PointArray() | EMAN::PointArray | |
