- c -
- cache_au_planes() : EMAN::Symmetry3D
- calc_amp1() : EMAN::EMAN1Ctf
- calc_amplitude() : EMAN::EMAN1Ctf
- calc_az_dist() : EMAN::EMData
- calc_bessel() : EMAN::Util
- calc_best_fft_size() : EMAN::Util
- calc_bilinear_least_square() : EMAN::Util
- calc_ccf() : EMAN::EMData
- calc_ccf_masked() : EMAN::EMData
- calc_ccfx() : EMAN::EMData
- calc_correlation() : EMAN::XYData
- calc_ctf1() : EMAN::EMAN1Ctf
- calc_dist() : EMAN::EMData
- calc_fast_sigma_image() : EMAN::EMData
- calc_flcf() : EMAN::EMData
- calc_g1() : EMAN::EMAN1Ctf
- calc_g2() : EMAN::EMAN1Ctf
- calc_gamma() : EMAN::EMAN1Ctf
- calc_helicity() : EMAN::PointArray
- calc_hist() : EMAN::EMData
- calc_lambda() : EMAN::EMAN1Ctf
- calc_least_square_fit() : EMAN::Util
- calc_locals() : EMAN::CircularMaskProcessor, EMAN::CoordinateProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskGaussInvProcessor, EMAN::MorphologicalProcessor, EMAN::RealPixelProcessor
- calc_mean() : EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeHistPeakProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitProcessor, EMAN::NormalizeUnitSumProcessor
- calc_mutual_correlation() : EMAN::EMData
- calc_noise() : EMAN::EMAN1Ctf, EMAN::EMAN2Ctf
- calc_radial_dist() : EMAN::EMData
- calc_ref_image_index() : EMAN::LstFastIO, EMAN::LstIO
- calc_sigma() : EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeProcessor, EMAN::NormalizeUnitProcessor, EMAN::NormalizeUnitSumProcessor
- calc_snr() : EMAN::EMAN1Ctf
- calc_total_length() : EMAN::PointArray
- calc_transform() : EMAN::PointArray
- calculate_min_max_vals() : EMAN::MarchingCubes
- calculate_surface() : EMAN::MarchingCubes
- cb2sph() : EMAN::ChaoProjector
- cconj() : EMAN::EMData
- center_to_zero() : EMAN::PointArray
- change_filename_ext() : EMAN::Util
- check_file_by_magic() : EMAN::Util
- check_image() : EMAN::TestUtil
- check_neighbors() : EMAN::TomoSeg
- check_read_access() : EMAN::ImageIO
- check_region() : EMAN::ImageIO
- check_swap() : EMAN::MrcIO
- check_write_access() : EMAN::ImageIO
- CircularAverageAnalyzer() : EMAN::CircularAverageAnalyzer
- CircularMaskProcessor() : EMAN::CircularMaskProcessor
- ClampingProcessor() : EMAN::ClampingProcessor
- classify() : EMAN::BoxingTools
- CleanUpSkeleton() : wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- clear() : EMAN::CustomVector< type >, EMAN::Dict, EMAN::FourierIterReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor
- clear_min_max_vals() : EMAN::MarchingCubes
- clip_inplace() : EMAN::EMData
- ClipInplaceVariables() : EMAN::EMData::ClipInplaceVariables
- close_imageio() : EMAN::EMUtil
- cmp() : EMAN::CccCmp, EMAN::Cmp, EMAN::DotCmp, EMAN::FRCCmp, EMAN::LodCmp, EMAN::OptSubCmp, EMAN::OptVarianceCmp, EMAN::PhaseCmp, EMAN::QuadMinDotCmp, EMAN::SqEuclideanCmp, EMAN::TomoCccCmp, EMAN::TomoFscCmp, EMAN::TomoWedgeCccCmp, EMAN::TomoWedgeFscCmp, EMAN::VerticalCmp, EMAN::XYZCmp
- color_vertices() : EMAN::MarchingCubes
- colored_rectangle() : EMAN::GLUtil
- colorMappingByClassSize() : EMAN::BoxSVDClassifier
- ColorRGBGenerator() : EMAN::ColorRGBGenerator
- column() : EMAN::Matrix3, EMAN::Matrix4
- common_lines() : EMAN::EMData
- common_lines_real() : EMAN::EMData
- components26() : wustl_mm::SkeletonMaker::Volume
- components6() : wustl_mm::SkeletonMaker::Volume
- compute_1d() : EMAN::Ctf, EMAN::EMAN1Ctf, EMAN::EMAN2Ctf
- compute_1d_fromimage() : EMAN::Ctf, EMAN::EMAN1Ctf, EMAN::EMAN2Ctf
- compute_2d_complex() : EMAN::Ctf, EMAN::EMAN1Ctf, EMAN::EMAN2Ctf
- compute_2d_real() : EMAN::Ctf, EMAN::EMAN1Ctf, EMAN::EMAN2Ctf
- compute_missingwedge() : EMAN::EMData
- conj() : EMAN::Quaternion
- const_iterator() : EMAN::Dict::const_iterator
- construct_helix() : EMAN::PointArray
- contour_isosurface() : EMAN::GLUtil
- convolute() : EMAN::EMData
- ConvolutionProcessor() : EMAN::ConvolutionProcessor
- CoordinateProcessor() : EMAN::CoordinateProcessor
- copy() : EMAN::PDBReader, EMAN::PointArray
- copy_exclude_keys() : EMAN::Dict
- copy_exclusive_keys() : EMAN::Dict
- copy_from() : EMAN::Ctf, EMAN::EMAN1Ctf, EMAN::EMAN2Ctf
- copy_keys_in() : EMAN::Dict
- copy_matrix_into_array() : EMAN::Transform
- copy_relevant_params() : EMAN::FactoryBase
- countExt() : wustl_mm::SkeletonMaker::Volume
- countInt() : wustl_mm::SkeletonMaker::Volume
- countIntEuler() : wustl_mm::SkeletonMaker::Volume
- create_inverse() : EMAN::Quaternion
- create_kernel() : EMAN::AreaProcessor, EMAN::LaplacianProcessor, EMAN::ZeroConstantProcessor
- create_processor_image() : EMAN::ImageProcessor
- create_radial_func() : EMAN::DoGFourierProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LinearRampFourierProcessor, EMAN::LinearRampProcessor, EMAN::LoGFourierProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::MatchSFProcessor, EMAN::SetSFProcessor
- cross() : EMAN::Vec3< Type >
- CSym() : EMAN::CSym
- CtfCAutoAverager() : EMAN::CtfCAutoAverager
- CtfCWautoAverager() : EMAN::CtfCWautoAverager
- CtfWtAverager() : EMAN::CtfWtAverager
- CtfWtFiltAverager() : EMAN::CtfWtFiltAverager
- CUDA_Aligner() : EMAN::CUDA_Aligner
- cuda_available() : EMAN::EMUtil
- CUDA_multiref_aligner() : EMAN::CUDA_multiref_aligner
- curveSkeleton() : wustl_mm::SkeletonMaker::Volume
- curveSkeleton2D() : wustl_mm::SkeletonMaker::Volume
- CustomVector() : EMAN::CustomVector< type >
- cut_slice() : EMAN::EMData