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== EMAN2 concepts == == EMAN2 Concepts and Conventions ==
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This page describes some important concepts in EMAN2  * [[EMAN2/ProjectDatabase|Projects, e2desktop.py and the database]]
 * [[EMAN2/BoxSize|Particle box-size and refinement speed, what size to use]]
 * [[EMAN2/Symmetry|EMAN2 and the asymmetric unit]]
 * [[Eman2DataStorage|File Formats, Data storage conventions, and the internal database (what is BDB: ?)]]
 * [[EMAN2/CtfModel|CTF model used in EMAN2]]
 * [[Eman2TransformInPython|Transformations in the context of projections, reconstructions, and in general]]
 * [[EMAN2/AlignersDescription|More information regarding the aligners]]
 * [[Eman2Metadata|Parameters/Metadata appearing in EMData attributes (and stored on disk with the image), accessed with get_attr and set_attr]]
 * [[Eman2AppMetadata|Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project]]
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Also note that this Wiki has just (1/2007) been started, and doesn't contain much yet. === Information on specific files used in 3-D single particle refinement ===
 * [[EMAN2/SimmxFiles|Similarity matrix image files (simmx_*)]]
 * [[EMAN2/ClassmxFiles|Classification matrix image files (classify_*)]]
 * [[EMAN2/ClsResultFiles|Class-Averaging Results matrix image files (cls_result_*)]] *
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 * [:EMAN2/Symmetry:EMAN2 and the asymmetric unit] {{attachment:single_image_iso_c.png}}

EMAN2/Concepts (last edited 2024-02-03 17:16:45 by SteveLudtke)