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| * [[EMAN2/ClassesFiles|Class-averages (classes_xx)]] |
EMAN2 Concepts and Conventions
File Formats, Data storage conventions, and the internal database (what is BDB: ?)
Practical Advice on EMAN2 in environments with network-shared directories (like NFS)
Transformations in the context of projections, reconstructions, and in general
Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project
Information on specific files used in 3-D single particle refinement
This section documents the contents of all of the files produced by running e2refine.py in one of the refine_xx directories.
Similarity matrix image files (simmx_xx, simmx_stg1_xx, proj_simmx_xx)
3-D reconstructions (threed_xx, threed_filt_xx, threed_mask_xx)
