Wiki Page Content

Differences between revisions 26 and 28 (spanning 2 versions)
Revision 26 as of 2011-07-11 19:54:03
Size: 2706
Editor: SteveLudtke
Comment:
Revision 28 as of 2011-07-20 17:40:50
Size: 2709
Editor: SteveLudtke
Comment:
Deletions are marked like this. Additions are marked like this.
Line 5: Line 5:
 * [[EMAN2/Symmetry|EMAN2 and the asymmetric unit]]  * [[Eman2TransformInPython|3D and 2D Transformations (rotation, translation, etc.)]]
 * [[EMAN2/Symmetry|Symmetry in EMAN2, and generating projections in an asymmetric unit]]
Line 7: Line 8:
 * [[Eman2NFS|Practical Advice on EMAN2 in environments with network-shared directories (like NFS)]]  * [[Eman2NFS|Using EMAN2 in environments with NFS or other network-shared directories]]
Line 9: Line 10:
 * [[Eman2TransformInPython|Transformations in the context of projections, reconstructions, and in general]]

EMAN2 Concepts and Conventions

Modular classes in EMAN2

  • Processors - Filters, masks and other basic image processing operations

  • Comparators (cmp) - Similarity metrics (cmp) for comparing two images/volumes

  • Aligners - Algorithms for aligning one image/volume to another

  • Averagers - Methods for averaging many images/volumes together

  • Projectors - Generate 2-D projections of 3-D volumes (or 1-D projections of 2-D images)

  • Reconstructors - Generate 3-D volumetric reconstructions from sets of 2-D images and orientation paramters

  • Analyzers - Perform various analyses on sets of images/volumes

  • Symmetries - Permissible symmetries to use in EMAN2

  • Orientation Generators (orientgen) - Methods for generating sets of orientations filling an asymmetric unit

Information on specific files used in 3-D single particle refinement

This section documents the contents of all of the files produced by running e2refine.py in one of the refine_xx directories.

single_image_iso_c.png

EMAN2/Concepts (last edited 2018-10-08 13:00:17 by SteveLudtke)