Differences between revisions 7 and 20 (spanning 13 versions)
Revision 7 as of 2008-09-18 16:58:05
Size: 334
Comment:
Revision 20 as of 2011-03-16 16:12:17
Size: 1402
Editor: SteveLudtke
Comment:
Deletions are marked like this. Additions are marked like this.
Line 3: Line 3:
This page describes some important concepts in EMAN2  * [[EMAN2/ProjectDatabase|Projects, e2desktop.py and the database]]
 * [[EMAN2/BoxSize|Particle box-size and refinement speed, what size to use]]
 * [[EMAN2/Symmetry|EMAN2 and the asymmetric unit]]
 * [[Eman2DataStorage|File Formats, Data storage conventions, and the internal database (what is BDB: ?)]]
 * [[EMAN2/CtfModel|CTF model used in EMAN2]]
 * [[Eman2TransformInPython|Transformations in the context of projections, reconstructions, and in general]]
 * [[EMAN2/AlignersDescription|More information regarding the aligners]]
 * [[Eman2Metadata|Parameters/Metadata appearing in EMData attributes (and stored on disk with the image), accessed with get_attr and set_attr]]
 * [[Eman2AppMetadata|Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project]]
Line 5: Line 13:
 * [:EMAN2/Symmetry:EMAN2 and the asymmetric unit]
 * [:EMAN2/TransformConventions:Transformations in the context of Projections, Reconstructions, and in General]
 * [:EMAN2/AlignersDescription:More information regarding the aligners]
=== Information on specific files used in 3-D single particle refinement ===
 * [[EMAN2/ProjectionFiles|Map projection files (projections_xx, proj_stg1_xx)]]
 * [[EMAN2/SimmxFiles|Similarity matrix image files (simmx_xx, simmx_stg1_xx, proj_simmx_xx)]]
 * [[EMAN2/ClassmxFiles|Classification matrix image files (classify_xx)]]
 * [[EMAN2/ClsResultFiles|Class-Averaging Results matrix image files (cls_result_xx)]]
 * [[EMAN2/ThreedFiles|3-D reconstructions (threed_xx, threed_filt_xx, threed_mask_xx)]]

{{attachment:single_image_iso_c.png}}

EMAN2/Concepts (last edited 2024-02-03 17:16:45 by SteveLudtke)