Differences between revisions 1 and 54 (spanning 53 versions)

Installing EMAN2 / SPHIRE

The new EMAN2.2/ SPHIRE 1.0 binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.

Download EMAN2 / SPHIRE here.

Binary Installation (most users should do this)

Compiling from Source and Setting Up a C++ Development Environment

EMAN2 source is on GitHub (detailed instructions below): http://github.com/cryoem/eman2
Compile EMAN2 with Anaconda (Linux and OSX) (recommended)
- 2.31
- 2.2

For older versions

Compile EMAN2 on Linux | EMAN2's non-wiki installation instructions
Compile EMAN2 on OS X with Anaconda (older version)
Compile EMAN2 on OS X with Homebrew (not recommended)
Compile EMAN2 with Visual Studio 2008 on Win7 32bit
Compile EMAN2 with Visual Studio .NET 2005 on Windows XP (OBSOLETE)

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-''''' Under Construction '''''
+= Installing EMAN2 / SPHIRE =
The new EMAN2.2/ SPHIRE 1.0  binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.

[[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_versions|Download EMAN2 / SPHIRE here]].

=== Binary Installation (most users should do this) ===
 * [[EMAN2/Install/BinaryInstallAnaconda|Installing EMAN2 / SPHIRE binaries, EMAN2.2 / SPHIRE 1.0 and later (NEW)]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.31| 2.31 / 1.3]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.3| 2.3 / 1.2]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.22|2.22 / 1.1]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.21|2.21 / 1.0]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.2|2.2 / 1.0beta]]
 * [[EMAN2/Install/BinaryInstall|Installing EMAN2 binaries, pre 2.2]]

=== Compiling from Source and Setting Up a C++ Development Environment ===
 * EMAN2 source is on GitHub (detailed instructions below): http://github.com/cryoem/eman2
 * [[EMAN2/COMPILE_EMAN2_ANACONDA|Compile EMAN2 with Anaconda (Linux and OSX)]] (recommended)
   * [[EMAN2/COMPILE_EMAN2_ANACONDA/2.31|2.31]]
   * [[EMAN2/COMPILE_EMAN2_ANACONDA|2.2]]

==== For older versions ====
 * [[EMAN2/COMPILE_EMAN2_LINUX|Compile EMAN2 on Linux]] | EMAN2's [[http://blake.bcm.tmc.edu/eman/eman2/INSTALL|non-wiki]] installation instructions
 * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Anaconda]] (older version)
 * [[EMAN2/BREW_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Homebrew]] (not recommended)
 * [[COMPILE_EMAN2_VS2008|Compile EMAN2 with Visual Studio 2008 on Win7 32bit]]
 * [[EMAN2/COMPILE_EMAN2_WINDOWS|Compile EMAN2 with Visual Studio .NET 2005 on Windows XP (OBSOLETE)]]

=== FAQ ===
 * [[EMAN2/FAQ/eman2BuildFAQ|EMAN2 compilation frequent asked questions]]
 * [[EMAN2/FAQ/EMAN2_unittest|How do I know my EMAN2 installation or compilation is successful?]]
 * [[EMAN2/FAQ/International|Does EMAN2 support Internationalization/other language conventions ?]]
 * [[EMAN2/FAQ/ClusterInstall|Why is EMAN2 distributed as an 'EMAN2' directory rather than Linux RPM's, etc. ?]]
 * [[EMAN2/FAQ/UseEman2_OSX|EMAN2 installed under OSX doesn't work properly. Any suggestions?]]
 * [[EMAN2/FAQ/UseEman2_Windows|EMAN2 installed under Windows doesn't work properly. Any suggestions?]]

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