Differences between revisions 27 and 79 (spanning 52 versions)
⇤ ← Revision 27 as of 2010-07-14 20:18:19 →
Size: 2327
Editor: root
Comment:
← Revision 79 as of 2025-01-16 14:30:52 → ⇥
Size: 1855
Editor: SteveLudtke
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
= Compiling and Installing EMAN2 =
'''Most users, even 'advanced' users should select a binary install.''' If the binaries don't work for you for some reason (please [[mailto:sludtke@bcm.edu|let us know]], or if you need to write new low-level image processing functions, then you can resort to a source-based installation.)		 = Installing EMAN2 / SPHIRE =
Line 4: Line 3:
[[http://ncmi.bcm.tmc.edu/ncmi/software/software_details?selected_software=counter_222|Download EMAN2 here]]. === Conda Installation of eman-dev ===
''Note: please consider installing [[EMAN2/Install/SourceInstall|from source]] instead''
Line 6: Line 6:
EMAN2 uses an increasingly popular approach of writing all of the main computationally intensive image processing operations in C++, but writing all of the user programs, including those with GUIs (graphical user interfaces) in a scripting language called [[http://www.python.org|Python]]. All of these Python level programs can be edited by the end-user WITHOUT requiring a C++ development environment. Note that most users won't want or need even this level of customization. [[EMAN2/Install/CondaInstall|Install EMAN2 in a conda environment]]
Line 8: Line 8:
=== Before Installing a New Version ===
 * Run 'e2bdb.py -c'
 * Check [[EMAN2/ChangeLog|the ChangeLog]] for important update info		 === Binary Installation (No longer maintained, older versions only) ===
[[EMAN2/Install/BinaryInstallAnaconda|Install EMAN2 binaries]]
Line 12: Line 11:
=== Binary Installation ===
 * [[EMAN2/Install/BinaryInstall|Installing EMAN2 binaries]]
Line 16: Line 13:
 * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X]]
EMAN2 source is hosted on [[http://github.com/cryoem/eman2|GitHub:cryoem/eman2]], follow instructions below:

 * [[EMAN2/Install/SourceInstall|Compile EMAN2 with MiniForge (Linux and OSX) (recommended)]]

==== For older versions ====
Line 18: Line 20:
 * [[EMAN2/COMPILE_EMAN2_WINDOWS|Compile EMAN2 with Visual Studio .NET 2005 on Windows XP]]  * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Anaconda]] (older version)
 * [[EMAN2/BREW_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Homebrew]] (not recommended)
Line 20: Line 23:
 * [[EMAN2/ExternalLibraries|External libraries needed for EMAN2 compilation]]  * [[EMAN2/COMPILE_EMAN2_WINDOWS|Compile EMAN2 with Visual Studio .NET 2005 on Windows XP (OBSOLETE)]]
Line 22: Line 25:
=== FAQ === === FAQ (Outdated) ===
Line 25: Line 28:
 * [[EMAN2/FAQ/Py_initModule4_64|I try to run eman2 script, got error like "ImportError: ....libboost....: undefined symbol: Py_InitModule4_64", what does that mean?]]
 * [[EMAN2/FAQ/EMAN2Mandriva2009Segfault|I compiled EMAN2 on Mandriva 2009, everything looks OK, but I got segmentation fault when I try to run e2display.py or e2boxer.py.]]
 * More installation FAQs can be found on the [[EMAN2/FAQ|FAQs]] page.		  * [[EMAN2/FAQ/International|Does EMAN2 support Internationalization/other language conventions ?]]
 * [[EMAN2/FAQ/ClusterInstall|Why is EMAN2 distributed as an 'EMAN2' directory rather than Linux RPM's, etc. ?]]
 * [[EMAN2/FAQ/UseEman2_OSX|EMAN2 installed under OSX doesn't work properly. Any suggestions?]]
 * [[EMAN2/FAQ/UseEman2_Windows|EMAN2 installed under Windows doesn't work properly. Any suggestions?]]

Installing EMAN2 / SPHIRE

Conda Installation of eman-dev

Note: please consider installing from source instead

Install EMAN2 in a conda environment

Binary Installation (No longer maintained, older versions only)

Install EMAN2 binaries

Compiling from Source and Setting Up a C++ Development Environment

EMAN2 source is hosted on GitHub:cryoem/eman2, follow instructions below:

For older versions

FAQ (Outdated)

icos_saff.png

EMAN2/Install (last edited 2025-01-16 14:30:52 by SteveLudtke)