Differences between revisions 37 and 69 (spanning 32 versions)

Installing EMAN2 / SPHIRE

Conda Installation of eman-dev

Install Miniconda and mamba.
Run
```
   1   mamba create -n eman-dev eman-dev -c cryoem -c conda-forge
   2   conda activate eman-dev
```

Binary Installation (most users should do this)

Download EMAN2 / SPHIRE binaries here.

Install EMAN2 / SPHIRE binaries
- 2.91 / 1.4
- Unstable / nightly / continuous
Install EMAN2 / SPHIRE binaries, previous versions
Install EMAN2 binaries, pre 2.2

Compiling from Source and Setting Up a C++ Development Environment

EMAN2 source is hosted on GitHub:cryoem/eman2, follow instructions below:

Compile EMAN2 with Miniconda (Linux and OSX) (recommended)

For older versions

Compile EMAN2 on Linux | EMAN2's non-wiki installation instructions
Compile EMAN2 on OS X with Anaconda (older version)
Compile EMAN2 on OS X with Homebrew (not recommended)
Compile EMAN2 with Visual Studio 2008 on Win7 32bit
Compile EMAN2 with Visual Studio .NET 2005 on Windows XP (OBSOLETE)

-  ⇤ ← Revision 37 as of 2017-01-25 00:05:19 → 
  Size: 1930
  Editor: SteveLudtke
  Comment:
+   ← Revision 69 as of 2022-10-30 00:08:54 → ⇥
  Size: 2566
  Editor: TunayDurmaz
  Comment: conda install eman-dev
-Deletions are marked like this.
+Additions are marked like this.
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-= Installing EMAN2 =
The new EMAN2.2 binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.
+= Installing EMAN2 / SPHIRE =
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-[[http://ncmi.bcm.tmc.edu/ncmi/software/software_details?selected_software=counter_222|Download EMAN2 here]].
+=== Conda Installation of eman-dev ===

 1. [[EMAN2/COMPILE_EMAN2_ANACONDA#Initial_Setup_.28one_time.29|Install Miniconda and mamba]].
 1. Run
 {{{#!highlight bash
  mamba create -n eman-dev eman-dev -c cryoem -c conda-forge
  conda activate eman-dev
}}}
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- * [[EMAN2/Install/BinaryInstall|Installing EMAN2 binaries]]
+[[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_versions|Download EMAN2 / SPHIRE binaries here]].

 * Install EMAN2 / SPHIRE binaries
   * [[EMAN2/Install/BinaryInstallAnaconda/2.91 |2.91  / 1.4]]
   * [[EMAN2/Install/BinaryInstallAnaconda     |Unstable / nightly / continuous]]
 * Install EMAN2 / SPHIRE binaries, previous versions
   * [[EMAN2/Install/BinaryInstallAnaconda/2.31|2.31 / 1.3]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.3 |2.3  / 1.2]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.22|2.22 / 1.1]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.21|2.21 / 1.0]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.2 |2.2  / 1.0beta]]
 * [[EMAN2/Install/BinaryInstall|Install EMAN2 binaries, pre 2.2]]
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- * To get EMAN2 source, please go to GitHub: [[http://github.com/cryoem/eman2]]
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+EMAN2 source is hosted on [[http://github.com/cryoem/eman2|GitHub:cryoem/eman2]], follow instructions below:

 * [[EMAN2/COMPILE_EMAN2_ANACONDA|Compile EMAN2 with Miniconda (Linux and OSX) (recommended)]]

==== For older versions ====
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- * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X]]
 * [[EMAN2/BREW_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Homebrew]]
+ * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Anaconda]] (older version)
 * [[EMAN2/BREW_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Homebrew]] (not recommended)
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-=== FAQ ===
+=== FAQ (Outdated) ===