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This page has links to very short demos/tutorials in EMAN2. = EMAN2 TUTORIALS =
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== Using e2.py == == Beginners (introductory tutorials) ==

==== 2D single particle analysis (SPA) ====

 * The old SPR tutorial - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]])

 * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01]]

==== 3D single particle tomography (SPT) ====
 * NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].
 [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]]
 * UPDATED on April 18, 2011. '''It SHOULD be a valid PDF'''. If not, please report it, and try to open in with OpenOffice or Word.


==== 2D assessment of heterogeneity ====
 * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]]

== Advanced (EMAN2 through the ''e2.py'' Python prompt) ==
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* [[EMAN2/Tutorials/RotateTranslate|Rotate and translate an image]] * [[EMAN2/Tutorials/RotateTranslate|Rotate, translate, scale or mirror an image]]
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* [[EMAN2/Tutorials/iter_pixels|Iterate through the pixels of an image]]

* [[EMAN2/Tutorials/make_a_projection|Make a projection of a 3D model, project through the asymmetric unit]]

{{attachment:2d_image_3dplot_2.png}}

EMAN2 TUTORIALS

Beginners (introductory tutorials)

2D single particle analysis (SPA)

3D single particle tomography (SPT)

  • NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].

    e2spt_users_guide.pdf

  • UPDATED on April 18, 2011. It SHOULD be a valid PDF. If not, please report it, and try to open in with OpenOffice or Word.

2D assessment of heterogeneity

Advanced (EMAN2 through the ''e2.py'' Python prompt)

* Generate and display an EMAN2 test image

* Rotate, translate, scale or mirror an image

* Add and multiply images, add and multiply by constants

* Convert a real/imaginary image into an amplitude/phase image and vice versa

* Iterate through the pixels of an image

* Make a projection of a 3D model, project through the asymmetric unit

2d_image_3dplot_2.png

* Change log level in EMAN2

EMAN2/Tutorials (last edited 2024-04-05 01:51:27 by MuyuanChen)