Differences between revisions 24 and 69 (spanning 45 versions)
Revision 24 as of 2009-03-31 17:23:30
Size: 747
Comment:
Revision 69 as of 2012-05-04 12:08:02
Size: 2337
Editor: SteveLudtke
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
This page has links to very short demos/tutorials in EMAN2. Please forward any requests to the EMAN2 developors. = EMAN2 TUTORIALS =
Line 3: Line 3:
== Using Python/e2.py == == Beginners (introductory tutorials) ==

''Please note that we are continuously developing and updating the tutorials. Items that are greyed out
are planned but the tutorials have not yet been completed. If you have a request for a particular tutorial
please feel free to email sludtke@bcm.edu.''


==== Single particle analysis (SPA) - 2D particles ====

 * [[EMAN2/Eman1Transition|EMAN1 to EMAN2 Transition Guide]]
 * The old SPR tutorial (2008 Workshop) - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]])
 * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01 (Data on same page)]]
 * [[OxfordWs2012|The Validation tutorial from the Oxford 2012 EMAN2 workshop, compatible with EMAN Nightly Build (Data on same page)]]
 * [[attachment:rct_tutorial.pdf|Tutorial on using EMAN2 for Random Conical Tilt reconstructions]]


==== Single particle tomography (SPT) - 3D particles ====
 * NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].
 [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]]

==== 2D assessment of heterogeneity ====
 * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] (under construction)

==== Adding an e2program to the program manger workflow ====
 * [[EMAN2PMWorkflow|Modifying the EMAN2 projectmanager workflow]]

== Advanced (EMAN2 through the ''e2.py'' Python prompt) ==
Line 12: Line 38:
* [[EMAN2/Tutorials/iter_pixels| Iterate through the pixels of an image ]] * [[EMAN2/Tutorials/iter_pixels|Iterate through the pixels of an image]]
Line 14: Line 40:
* [[EMAN2/Tutorials/make_a_projection| Make a projection of a 3D model, project through the asymmetric unit ]] * [[EMAN2/Tutorials/make_a_projection|Make a projection of a 3D model, project through the asymmetric unit]]
Line 16: Line 42:
{{attachment:2d_image_3dplot_2.png}}

EMAN2 TUTORIALS

Beginners (introductory tutorials)

Please note that we are continuously developing and updating the tutorials. Items that are greyed out are planned but the tutorials have not yet been completed. If you have a request for a particular tutorial please feel free to email sludtke@bcm.edu.

Single particle analysis (SPA) - 2D particles

Single particle tomography (SPT) - 3D particles

  • NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].

    e2spt_users_guide.pdf

2D assessment of heterogeneity

Adding an e2program to the program manger workflow

Advanced (EMAN2 through the ''e2.py'' Python prompt)

* Generate and display an EMAN2 test image

* Rotate, translate, scale or mirror an image

* Add and multiply images, add and multiply by constants

* Convert a real/imaginary image into an amplitude/phase image and vice versa

* Iterate through the pixels of an image

* Make a projection of a 3D model, project through the asymmetric unit

2d_image_3dplot_2.png

* Change log level in EMAN2

EMAN2/Tutorials (last edited 2024-04-05 01:51:27 by MuyuanChen)