Diff for "MichaelBell"

Differences between revisions 27 and 31 (spanning 4 versions)

Michael Bell, Ludtke Lab (2014 - 2019)

All are welcome to use the materials provided here. Credit is appreciated but not required.

Thesis

Note: All protein illustrations in are licensed under a Creative Commons Attribution 4.0 International license by David S. Goodsell and the RCSB PDB.

Thesis Defense Presentation

defense_slides.key

Posters

cryoet_poster.pdf, cryoet_poster.pptx

scbmb_retreat_2016.pdf

biochem_retreat_2016.pdf

biophysical_society_2017.pdf

keck_arc_2017.pdf

sealy_2018.pdf

Note, these posters are have been uploaded without modification. There may be typos.

Talks

mapchallenge_wrapup_2017.key

microscopy_microanalysis_2018.ppt

Select Thesis Figures

Please see my thesis for corresponding figure captions.

Structural biology overview

Transmission electron microscopes (TEM)

TEM grids

Movie-mode imaging

Basic image processing

Fourier transforms

Single particle analysis

Contrast transfer function (CTF)

Gold Standard resolution measurement via Fourier Shell Correlation (FSC)

Electron cryo-tomography (cryoET)

Subtomogram Averaging

-  ⇤ ← Revision 27 as of 2019-04-04 15:47:26 → 
  Size: 1925
  Editor: MichaelBell
  Comment:
+   ← Revision 31 as of 2019-04-04 15:54:56 → ⇥
  Size: 1891
  Editor: MichaelBell
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 39:
-Structural biology overview
{{attachment:struct_bio.png||align="center",width=400}}
+Please see my thesis for corresponding figure captions.
-Line 42:
+Line 41:
-Transmission electron microscopes (TEM)
{{attachment:tem.png||align="center",width=400}}
-Line 45:
+Line 42:
-TEM grids
{{attachment:grid.png||align="center",width=400}}
+'''Structural biology overview'''
-Line 48:
+Line 44:
-Movie-mode imaging
{{attachment:movie.png||align="center",width=400}}
+{{attachment:struct_bio.png||width=400}}
-Line 51:
+Line 46:
-Basic image processing
{{attachment:imgproc.png||align="center",width=400}}
+'''Transmission electron microscopes (TEM)'''
-Line 54:
+Line 48:
-Fourier transforms
{{attachment:fft.png||align="center",width=400}}
+{{attachment:tem.png||width=400}}
-Line 57:
+Line 50:
-Single particle analysis
{{attachment:spa.png||align="center",width=400}}
+'''TEM grids'''
-Line 60:
+Line 52:
-Contrast transfer function (CTF)
{{attachment:ctf.png||align="center",width=400}}
+{{attachment:grid.png||width=400}}
-Line 63:
+Line 54:
-Resolution measurement via Fourier Shell Correlation (FSC)
{{attachment:fsc.png||align="center",width=400}}
+'''Movie-mode imaging'''
-Line 66:
+Line 56:
-Electron cryo-tomography (cryoET)
{{attachment:cryoet.png||align="center",width=400}}
+{{attachment:movie.png||width=400}}
-Line 69:
+Line 58:
-Subtomogram Averaging / Single particle tomography (SPT)
{{attachment:subtomoavg.png||align="center",width=400}}
+'''Basic image processing'''

{{attachment:imgproc.png||width=400}}

'''Fourier transforms'''

{{attachment:fft.png||width=400}}

'''Single particle analysis''' 

{{attachment:spa.png||width=400}}

'''Contrast transfer function (CTF)'''

{{attachment:ctf.png||width=400}}

'''Gold Standard resolution measurement via Fourier Shell Correlation (FSC)''' 

{{attachment:fsc.png||width=400}}

'''Electron cryo-tomography (cryoET)''' 

{{attachment:cryoet.png||width=400}}

'''Subtomogram Averaging'''

{{attachment:subtomoavg.png||width=400}}