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| All are welcome to use the materials provided here. Credit is appreciated but not required. | All are welcome to use the materials provided here. Credit is greatly appreciated but not required. |
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| Note: All protein illustrations in are licensed under a Creative Commons Attribution 4.0 International license by David S. Goodsell and the RCSB PDB. |
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| '''Note:''' The presenter notes in this file contain a full transcription of my talk. |
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| [[attachment:cryoet_poster.pdf]], [[attachment:cryoet_poster.pptx]] | 2019 Sealy Symposium for Structural Biology and Molecular Biophysics & 2018 Keck ARC 2018: [[attachment:cryoet_poster.pptx]] |
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| [[attachment:scbmb_retreat_2016.pdf]] | Keck Annual Research Conference 2017: [[attachment:keck_arc_2017.pdf]] |
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| [[attachment:biochem_retreat_2016.pdf]] | Biophysical Society Meeting 2017: [[attachment:biophysical_society_2017.pdf]] |
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| [[attachment:biophysical_society_2017.pdf]] | 2016 Biochemistry departmental retreat: [[attachment:biochem_retreat_2016.pdf]] |
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| [[attachment:keck_arc_2017.pdf]] [[attachment:sealy_2018.pdf]] Note, these posters are have been uploaded without modification. There may be typos. |
2016 Structural & Computational Biology and Molecular Biophysics Graduate Program Retreat: [[attachment:scbmb_retreat_2016.pdf]] |
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| [[attachment:mapchallenge_wrapup_2017.key]] | Slides from the 2015 EMDatabank map/model challenge wrap up meeting: [[attachment:mapchallenge_wrapup_2017.key]] |
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| [[attachment:microscopy_microanalysis_2018.ppt]] | Slides from the 2018 Microscopy & Microanalysis meeting on the EMAN2 cryoET workflow: [[attachment:microscopy_microanalysis_2018.ppt]] Slides from 2018 Quantitative and Computational Biosciences annual retreat on motion correction: [[attachment:qcbarc2018.key]] |
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| Structural biology overview {{attachment:struct_bio.png||align="center",width=400}} |
Please see my thesis for corresponding figure captions. |
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| Transmission electron microscopes (TEM) {{attachment:tem.png||align="center",width=400}} |
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| TEM grids {{attachment:grid.png||align="center",width=400}} |
'''Structural biology overview''' |
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| Movie-mode imaging {{attachment:movie.png||align="center",width=400}} |
{{attachment:struct_bio.png||width=400}} |
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| Basic image processing {{attachment:imgproc.png||align="center",width=400}} |
'''Transmission electron microscopes (TEM)''' |
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| Fourier transforms {{attachment:fft.png||align="center",width=400}} |
{{attachment:tem.png||width=400}} |
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| Single particle analysis {{attachment:spa.png||align="center",width=400}} |
'''TEM grids''' |
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| Contrast transfer function (CTF) {{attachment:ctf.png||align="center",width=400}} |
{{attachment:grid.png||width=400}} |
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| Resolution measurement via Fourier Shell Correlation (FSC) {{attachment:fsc.png||align="center",width=400}} |
'''Movie-mode imaging''' |
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| Electron cryo-tomography (cryoET) {{attachment:cryoet.png||align="center",width=400}} |
{{attachment:movie.png||width=400}} |
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| Subtomogram Averaging / Single particle tomography (SPT) {{attachment:subtomoavg.png||align="center",width=400}} |
'''Basic image processing''' {{attachment:imgproc.png||width=400}} '''Fourier transforms''' {{attachment:fft.png||width=400}} '''Single particle analysis''' {{attachment:spa.png||width=400}} '''Contrast transfer function (CTF)''' {{attachment:ctf.png||width=400}} '''Gold Standard resolution measurement via Fourier Shell Correlation (FSC)''' {{attachment:fsc.png||width=400}} '''Electron cryo-tomography (cryoET)''' {{attachment:cryoet.png||width=400}} '''Subtomogram Averaging''' {{attachment:subtomoavg.png||width=400}} |
Michael Bell, Ludtke Lab (2014 - 2019)
All are welcome to use the materials provided here. Credit is greatly appreciated but not required.
Thesis
Thesis Defense Presentation
Note: The presenter notes in this file contain a full transcription of my talk.
Posters
2019 Sealy Symposium for Structural Biology and Molecular Biophysics & 2018 Keck ARC 2018:
Keck Annual Research Conference 2017: keck_arc_2017.pdf
Biophysical Society Meeting 2017: biophysical_society_2017.pdf
2016 Biochemistry departmental retreat: biochem_retreat_2016.pdf
2016 Structural & Computational Biology and Molecular Biophysics Graduate Program Retreat: scbmb_retreat_2016.pdf
Talks
Slides from the 2015 EMDatabank map/model challenge wrap up meeting: mapchallenge_wrapup_2017.key
Slides from the 2018 Microscopy & Microanalysis meeting on the EMAN2 cryoET workflow: microscopy_microanalysis_2018.ppt
Slides from 2018 Quantitative and Computational Biosciences annual retreat on motion correction: qcbarc2018.key
Select Thesis Figures
Please see my thesis for corresponding figure captions.
Structural biology overview
Transmission electron microscopes (TEM)
TEM grids
Movie-mode imaging
Basic image processing
Fourier transforms
Single particle analysis
Contrast transfer function (CTF)
Gold Standard resolution measurement via Fourier Shell Correlation (FSC)
Electron cryo-tomography (cryoET)
Subtomogram Averaging
