Diff for "Ws2011/Frealign"

Differences between revisions 1 and 6 (spanning 5 versions)

Frealign

Overview

[[http://emlab.rose2.brandeis.edu/frealign|Frealign] is a program for high-resolution refinement of 3D reconstructions from cryo-EM images of single particles, originally developed at the MRC/LMB. It is now developed and maintained by the Grigorieff lab at Brandeis.

The main FreAlign documentation can be found here.

Installation

Linux:

1) Download FreAlign here

2) Move the FreAlign tar file to your desired installation location

ex. mv frealign_v8.09_######.tar.gz /home/username/

3) Untar FreAlign: tar -xvf frealign_v8.09_######.tar.gz

4) In your .bashrc, include the command:

export PATH=/home/username/frealign_v8.09/bin:$PATH

5) FreAlign is ready to be run. From the command line:

frealign_v8.exe

OSX:

1) Download FreAlign from the above link.

2) Move the FreAlign tar file to your desired installation location

ex. mv frealign_v8.09_######.tar.gz /home/username/

3) Unzip FreAlign: tar -xvf frealign_v8.09_######.tar.gz

4) You will need a fortran compiler installed on your Mac.

5) Change to the source directory in your frealign installation directory:

cd /home/username/frealign_v8.09/src

6) Use the appropriate Makefile. Assuming you are using the Intel 64-bit x86:

make -f Makefile_OSX_86-64_intel

Windows: Dr. Grigorieff has kindly made a windows executable available for download, since establishing a Fortran build environment on Windows is

-  ⇤ ← Revision 1 as of 2011-02-23 16:31:08 → 
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  Comment:
+   ← Revision 6 as of 2011-03-08 13:41:42 → ⇥
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  Editor: SteveLudtke
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-=== ? Practical ===
+=== Overview ===
[[http://emlab.rose2.brandeis.edu/frealign|Frealign] is a program for high-resolution refinement of 3D reconstructions from cryo-EM images of single particles,
originally developed at the MRC/LMB. It is now developed and maintained by the Grigorieff lab at Brandeis.
-Line 4:
+Line 6:
-Frealign is a software suite for ...
+The main FreAlign documentation can be [[ http://emlab.rose2.brandeis.edu/sites/default/files/readme_frealign.txt|found here]].
-Line 6:
+Line 8:
-You can download Frealign here:
[[ ??? ]]]
+=== Installation ===
Linux:
-Line 9:
+Line 11:
-You can download data ...
[[attachment:frealign_demo_2011.tgz]] ...
+)   [[http://emlab.rose2.brandeis.edu/frealign|Download FreAlign here]]
-Line 12:
+Line 13:
-etc.
+)   Move the FreAlign tar file to your desired installation location

 . ex.   mv frealign_v8.09_######.tar.gz   /home/username/

3)   Untar FreAlign: tar -xvf frealign_v8.09_######.tar.gz

4)   In your .bashrc, include the command:

 . export PATH=/home/username/frealign_v8.09/bin:$PATH

5) FreAlign is ready to be run. From the command line:

 . frealign_v8.exe

OSX:

1) Download FreAlign from the above link.

2) Move the FreAlign tar file to your desired installation location

 . ex.   mv frealign_v8.09_######.tar.gz   /home/username/

3) Unzip FreAlign: tar -xvf frealign_v8.09_######.tar.gz

4) You will need a fortran compiler installed on your Mac.

5) Change to the source directory in your frealign installation directory:

 . cd /home/username/frealign_v8.09/src

6) Use the appropriate Makefile. Assuming you are using the Intel 64-bit x86:

 . make -f Makefile_OSX_86-64_intel


Windows:
Dr. Grigorieff has kindly made a windows executable available for download, since establishing a Fortran build environment
on Windows is