Diff for "Ws2011/Segger"

Differences between revisions 1 and 3 (spanning 2 versions)

Segger

Wed AM Practical

Segger is a tool for segmentind density maps, and for quick rigid-body docking of structures into density maps.

The software is provided as part of Chimera which will already be installed for the workshop.

Segmentation

Data:

GroEL at 10.0Å resolution: emd_1080.map.gz

Rigid-body Docking

Data:

GroEL Crystal Structure: PDB:1XCK

Here is some sample data to download:segger_demo_2011.tgz

References

[1] Pintilie, G., Zhang, J., Goddard, T., Chiu, W., Gossard, D. Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions, Journal of Structural Biology 170(3), pp 427-438, 2010

-  ⇤ ← Revision 1 as of 2011-02-04 18:18:29 → 
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+   ← Revision 3 as of 2011-02-23 17:18:36 → ⇥
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+Segger is a tool for segmentind density maps, and for quick rigid-body docking of structures into density maps.
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-Here is some sample data to download:
[[attachment:segger_demo_2011.tgz]]
+'''Segmentation'''
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+Data:

 * GroEL at 10.0Å resolution: [[ftp://emdb.rutgers.edu/structures/EMD-1080/map/emd_1080.map.gz|emd_1080.map.gz]]

'''Rigid-body Docking'''

Data:

 * GroEL Crystal Structure: [[http://www.pdb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=1XCK|PDB:1XCK]]



Here is some sample data to download:[[attachment:segger_demo_2011.tgz]]

References

[1] Pintilie, G., Zhang, J., Goddard, T., Chiu, W., Gossard, D. Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions, Journal of Structural Biology 170(3), pp 427-438, 2010