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| eman1_programs_procpdb [2025/07/05 18:48] – created steveludtke | eman1_programs_procpdb [2025/07/05 18:49] (current) – steveludtke |
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| ==== Parameters ==== | ==== Parameters ==== |
| || <infile>||Input file|| | || <infile>||Input file|| |
| ||[<outfile>]||Output file|| | ||[<outfile>]||Output file|| |
| ||[rot=<alt,az,phi>]||Rotation in EMAN convention|| | ||[rot=<alt,az,phi>]||Rotation in EMAN convention|| |
| ||[trans=<dx,dy,dz>]||Translate (before rotation)|| | ||[trans=<dx,dy,dz>]||Translate (before rotation)|| |
| ||[posttrans=<dx,dy,dz>]||Post-translation|| | ||[posttrans=<dx,dy,dz>]||Post-translation|| |
| ||[centeratoms]||Center based on the mean atom position|| | ||[centeratoms]||Center based on the mean atom position|| |
| ||[centerelec]||Center based on the center of electron charge|| | ||[centerelec]||Center based on the center of electron charge|| |
| ||[centermass]||Center based on the center of mass|| | ||[centermass]||Center based on the center of mass|| |
| ||[animorph=<n>,<apix>,<vecfile>]||This will use a morph vector file (segment3d) to morph atom positions|| | ||[animorph=<n>,<apix>,<vecfile>]||This will use a morph vector file (segment3d) to morph atom positions|| |
| ||[apix=<A/pix>]||multiply trans by apix|| | ||[apix=<A/pix>]||multiply trans by apix|| |
| ||[split]||Split file at TER records. Results imperfect.|| | ||[split]||Split file at TER records. Results imperfect.|| |
| ||[include=[helix,sheet,other]||[include=[helix,sheet,other]]|| | ||[include=[helix,sheet,other]||[include=[helix,sheet,other]]|| |
| ||[chains=<chainltr>]||eg - "ABO", for extracting a portion of a complex|| | ||[chains=<chainltr>]||eg - "ABO", for extracting a portion of a complex|| |
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