#include "emobject.h"
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Go to the source code of this file.
Classes | |
| class | EMAN::Aligner |
| Aligner class defines image alignment method. More... | |
| class | EMAN::ScaleAlignerABS |
| This is an ABS for use in constructing, rt_scale, rt_flip, etc scale aligners. More... | |
| class | EMAN::ScaleAligner |
| Scale aligner. More... | |
| class | EMAN::TranslationalAligner |
| Translational 2D Alignment using cross correlation. More... | |
| class | EMAN::RotationalAligner |
| rotational alignment using angular correlation More... | |
| class | EMAN::RotationalAlignerBispec |
| rotational alignment using invariants More... | |
| class | EMAN::RotationalAlignerIterative |
| rotational alignment using the iterative method (in this case we only do one iteration b/c we are not doing a translation. More... | |
| class | EMAN::RotatePrecenterAligner |
| rotational alignment assuming centers are correct More... | |
| class | EMAN::RotateTranslateAligner |
| rotational, translational alignment More... | |
| class | EMAN::RotateTranslateAlignerBispec |
| rotational, translational alignment More... | |
| class | EMAN::RotateTranslateScaleAligner |
| rotational, translational, scaling alignment More... | |
| class | EMAN::RotateTranslateAlignerIterative |
| Iterative rotational, translational alignment. More... | |
| class | EMAN::RotateTranslateScaleAlignerIterative |
| Iterative rotational, translational alignment with scaling. More... | |
| class | EMAN::RotateTranslateAlignerPawel |
| Rotational, translational alignment by resampling to polar coordinates. More... | |
| class | EMAN::RotateTranslateBestAligner |
| rotational, translational alignment More... | |
| class | EMAN::RotateFlipAligner |
| rotational and flip alignment More... | |
| class | EMAN::RotateFlipAlignerIterative |
| rotational and flip alignment, iterative style More... | |
| class | EMAN::RotateTranslateFlipAligner |
| rotational, translational and flip alignment More... | |
| class | EMAN::RotateTranslateFlipScaleAligner |
| rotational, translational, flip, scaling alignment More... | |
| class | EMAN::RotateTranslateFlipAlignerIterative |
| rotational, translational and flip alignment, iterative style More... | |
| class | EMAN::RotateTranslateFlipScaleAlignerIterative |
| Iterative rotational, translational alignment with flipping and scaling. More... | |
| class | EMAN::RotateTranslateFlipAlignerPawel |
| Rotational, translational alignment by resampling to polar coordinates. More... | |
| class | EMAN::RTFExhaustiveAligner |
| rotational, translational and flip alignment using real-space methods. More... | |
| class | EMAN::RTFSlowExhaustiveAligner |
| rotational, translational and flip alignment using exhaustive search. More... | |
| class | EMAN::SymAlignProcessor |
| Aligns a particle with the specified symmetry into the standard orientation for that symmetry. More... | |
| class | EMAN::RefineAligner |
| refine alignment. More... | |
| class | EMAN::RefineAlignerCG |
| Conjugate gradient refine alignment. More... | |
| class | EMAN::SymAlignProcessorQuat |
| Aligns a particle with a specified symetry to its symmetry axis using the simplex multidimensional minimization algorithm. More... | |
| class | EMAN::Refine3DAlignerGrid |
| Refine alignment. More... | |
| class | EMAN::Refine3DAlignerQuaternion |
| Refine alignment. More... | |
| class | EMAN::RT3DGridAligner |
| rotational and translational alignment using a square qrid of Altitude and Azimuth values (the phi range is specifiable) This aligner is ported from the original tomohunter.py - it is less efficient than searching on the sphere (RT3DSphereAligner). More... | |
| class | EMAN::RT3DSphereAligner |
| 3D rotational and translational alignment using spherical sampling, can reduce the search space based on symmetry. More... | |
| class | EMAN::RT2DTreeAligner |
| 2D rotational and translational alignment using a hierarchical method with gradually decreasing downsampling in Fourier space. More... | |
| class | EMAN::RT2Dto3DTreeAligner |
| Alignment of a 2D image into a 3D volume using a hierarchical method with gradually decreasing downsampling in Fourier space. More... | |
| class | EMAN::RT3DTreeAligner |
| 3D rotational and translational alignment using a hierarchical method with gradually decreasing downsampling in Fourier space. More... | |
| class | EMAN::RT3DLocalTreeAligner |
| 3D rotational and translational alignment using a hierarchical method with gradually decreasing downsampling in Fourier space. More... | |
| class | EMAN::RT3DSymmetryAligner |
| 3D rotational symmetry aligner. More... | |
| class | EMAN::FRM2DAligner |
| class | EMAN::CUDA_Aligner |
| class | EMAN::CUDA_multiref_aligner |
Namespaces | |
| namespace | EMAN |
| E2Exception class. | |
Functions | |
| void | EMAN::dump_aligners () |
| map< string, vector< string > > | EMAN::dump_aligners_list () |
