#include <processor.h>

Inheritance diagram for EMAN::ModelHelixProcessor:

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Collaboration diagram for EMAN::ModelHelixProcessor:

Protected Member Functions
float	radprofile (float r, int type)

Additional Inherited Members
Public Types inherited from EMAN::Processor
enum	fourier_filter_types { TOP_HAT_LOW_PASS , TOP_HAT_HIGH_PASS , TOP_HAT_BAND_PASS , TOP_HOMOMORPHIC , GAUSS_LOW_PASS , GAUSS_HIGH_PASS , GAUSS_BAND_PASS , GAUSS_INVERSE , GAUSS_HOMOMORPHIC , BUTTERWORTH_LOW_PASS , BUTTERWORTH_HIGH_PASS , BUTTERWORTH_HOMOMORPHIC , KAISER_I0 , KAISER_SINH , KAISER_I0_INVERSE , KAISER_SINH_INVERSE , SHIFT , TANH_LOW_PASS , TANH_HIGH_PASS , TANH_HOMOMORPHIC , TANH_BAND_PASS , RADIAL_TABLE , CTF_ }
	Fourier filter Processor type enum. More...

Public Member Functions inherited from EMAN::Processor
virtual	~Processor ()

virtual void	process_inplace (EMData *image)=0
	To process an image in-place. More...

virtual EMData *	process (const EMData *const image)
	To proccess an image out-of-place. More...

virtual void	process_list_inplace (vector< EMData * > &images)
	To process multiple images using the same algorithm. More...

virtual string	get_name () const =0
	Get the processor's name. More...

virtual Dict	get_params () const
	Get the processor parameters in a key/value dictionary. More...

virtual void	set_params (const Dict &new_params)
	Set the processor parameters using a key/value dictionary. More...

virtual TypeDict	get_param_types () const
	Get processor parameter information in a dictionary. More...

virtual string	get_desc () const =0
	Get the descrition of this specific processor. More...

Static Public Member Functions inherited from EMAN::Processor
static string	get_group_desc ()
	Get the description of this group of processors. More...

static void	EMFourierFilterInPlace (EMData *fimage, Dict params)
	Compute a Fourier-filter processed image in place. More...

static EMData *	EMFourierFilter (EMData *fimage, Dict params)
	Compute a Fourier-processor processed image without altering the original image. More...

Protected Attributes inherited from EMAN::Processor
Dict	params

Detailed Description

Definition at line 9237 of file processor.h.

Member Function Documentation

◆ radprofile()

float ModelHelixProcessor::radprofile	(	float	r,
		int	type
	)

protected

Definition at line 13135 of file processor.cpp.

{
        // r in angstrom
        double ret = 0;//iterations ==> rounding is problematic with float types if 15 < r < 20 and really bad if 20 < r < 30
        if (type == 0) { // pure Gaussian falloff
                r /= 2;
                ret = exp(-r * r);
        } else if (type == 1) { // pure Gaussian falloff + negative dip, so mean is 0
                r /= 2;
                ret = (1 - r * r / 4) * exp(-r * r / 4);
        } else if (type == 2) {
                // polynomial fitting to the radial profile of real helix density
                // f=a0*x^n+a1+x^(n-1)+ ... +a[n-1]*x+an
                //float an[11]={2.847024584977009e-10,-3.063997224364090e-08,1.418801040660860e-06,-3.678676414383996e-05,5.804871622801710e-04,-5.640340018430164e-03,3.208802421493864e-02,-9.068475313823952e-02,7.097329559749284e-02,-9.993347339658298e-02,1.000000000000000e+00};
 
                // now the fitting to the original profile
                if (r >= 12.2)
                        return 0; //We don't want that part of the polynomial --> goes way below zero
                static float an[15] = { -3.9185246832229140e-16f,
                                3.3957205298900993e-14f, 2.0343351971222658e-12f,
                                -4.4935965816879751e-10f, 3.0668169835080933e-08f,
                                -1.1904544689091790e-06f, 2.9753088549414953e-05f,
                                -4.9802112876220150e-04f, 5.5900917825309360e-03f,
                                -4.0823714462925299e-02f, 1.8021733669148599e-01f,
                                -4.0992557296268717e-01f, 3.3980328566901458e-01f,
                                -3.6062024812411908e-01f, 1.0000000000000000e+00f };
 
                ret = an[0];
                for (int i = 1; i < 15; i++) {
                        ret = ret * r + an[i];
                }
        }
        return (float)ret;
}

Referenced by EMAN::ModelEMCylinderProcessor::process_inplace(), and EMAN::ApplyPolynomialProfileToHelix::process_inplace().

The documentation for this class was generated from the following files:

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Function Documentation

◆ radprofile()