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EMAN2
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#include <spiderio.h>
Public Attributes | |
| float | nslice |
| float | nrow |
| float | irec |
| float | nhistrec |
| float | type |
| file type: 1 : 2D image; 3 : 3D volume; -11 : 2D Fourier, mixed radix odd. More... | |
| float | mmvalid |
| max/min flag. More... | |
| float | max |
| float | min |
| float | mean |
| float | sigma |
| float | ihist |
| float | nsam |
| float | headrec |
| float | angvalid |
| float | phi |
| float | theta |
| float | gamma |
| float | dx |
| float | dy |
| float | dz |
| float | scale |
| float | headlen |
| float | reclen |
| float | istack |
| istack = 0 for simple 2D or 3D (non-stack) files. More... | |
| float | inuse |
| float | maxim |
| maxim is only used in the overall header for a stacked image file. More... | |
| float | imgnum |
| imgnum is only used in a stacked image header. More... | |
| float | lastindx |
| This position is only used in the overall header of indexed stacks. More... | |
| float | u6 |
| float | u7 |
| float | Kangle |
| flag that additional angles are present in header. More... | |
| float | phi1 |
| float | theta1 |
| float | psi1 |
| float | phi2 |
| float | theta2 |
| float | psi2 |
| char | u8 [48] |
| float | xf [27] |
| float | u9 [135] |
| char | date [11] |
| char | time [8] |
| char | title [160] |
Definition at line 88 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::angvalid |
Definition at line 118 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| char EMAN::SpiderIO::SpiderHeader::date[11] |
Definition at line 176 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::dx |
Definition at line 122 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::dy |
Definition at line 123 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::dz |
Definition at line 124 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::gamma |
Definition at line 121 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::headlen |
Definition at line 126 of file spiderio.h.
Referenced by EMAN::SingleSpiderIO::write_data(), and EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::headrec |
Definition at line 117 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::ihist |
Definition at line 115 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::imgnum |
imgnum is only used in a stacked image header.
It is the number of the current image or zero if the image is unused.
Definition at line 152 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::inuse |
Definition at line 142 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::irec |
Definition at line 92 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::istack |
istack = 0 for simple 2D or 3D (non-stack) files.
In an "image stack" there is one overall stack header followed by a stack of images in which each image has its own image header. (An image stack differs from a simple 3D image in that each stacked image has its own header.) A value >0 in this position in the overall stack header indicates a stack of images. A value of <0 inthis position in the overall stack header indicates an indexed stack of images and gives the maximum image number allowed in the index. for stacked image, istack=2 in overall header, istack =-1 in following individual images.
Definition at line 141 of file spiderio.h.
Referenced by EMAN::SpiderIO::get_nimg(), and EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::Kangle |
flag that additional angles are present in header.
1 = one additional rotation is present, 2 = additional rotation that preceeds the rotation that was stored in words 15..20.
Definition at line 166 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::lastindx |
This position is only used in the overall header of indexed stacks.
There, this position is the highest index currently in use.
Definition at line 156 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::max |
Definition at line 111 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::maxim |
maxim is only used in the overall header for a stacked image file.
It is the number of the highest image currently used in the stack. The number is updated, if necessary, when an image is added or deleted from the stack.
Definition at line 148 of file spiderio.h.
Referenced by EMAN::SpiderIO::get_nimg(), and EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::mean |
Definition at line 113 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::min |
Definition at line 112 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::mmvalid |
max/min flag.
Is set at 0 when the file is created, and at 1 when the maximum, minimum, average, and standard deviation have been computed and stored into this header.
Definition at line 110 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::nhistrec |
Definition at line 93 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::nrow |
Definition at line 91 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_data(), and EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::nsam |
Definition at line 116 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_data(), and EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::nslice |
Definition at line 90 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_data(), and EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::phi |
Definition at line 119 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::phi1 |
Definition at line 167 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::phi2 |
Definition at line 170 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::psi1 |
Definition at line 169 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::psi2 |
Definition at line 172 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::reclen |
Definition at line 127 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::scale |
Definition at line 125 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::sigma |
Definition at line 114 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::theta |
Definition at line 120 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::theta1 |
Definition at line 168 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::theta2 |
Definition at line 171 of file spiderio.h.
| char EMAN::SpiderIO::SpiderHeader::time[8] |
Definition at line 177 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| char EMAN::SpiderIO::SpiderHeader::title[160] |
Definition at line 178 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::type |
file type: 1 : 2D image; 3 : 3D volume; -11 : 2D Fourier, mixed radix odd.
-12 : 2D Fourier, mixed radix even. -21 : 3D Fourier, mixed radix odd. -22 : 3D Fourier, mixed radix even.
Definition at line 103 of file spiderio.h.
Referenced by EMAN::SpiderIO::write_single_header().
| float EMAN::SpiderIO::SpiderHeader::u6 |
Definition at line 158 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::u7 |
Definition at line 159 of file spiderio.h.
| char EMAN::SpiderIO::SpiderHeader::u8[48] |
Definition at line 173 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::u9[135] |
Definition at line 175 of file spiderio.h.
| float EMAN::SpiderIO::SpiderHeader::xf[27] |
Definition at line 174 of file spiderio.h.
1.9.2