volume_data.h

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// Copyright (C) 2005-2008 Washington University in St Louis, Baylor College of Medicine.  All rights reserved
// Author:        Sasakthi S. Abeysinghe (sasakthi@gmail.com)
// Description:   Stores information of a density volume
#include "emdata.h"
using namespace EMAN;
 
#ifndef SKELETON_MAKER_VOLUME_DATA_H
#define SKELETON_MAKER_VOLUME_DATA_H
 
namespace wustl_mm {
        namespace SkeletonMaker {
                class VolumeData {
                public:
                //Constructors & Destructor
                        VolumeData(EMData* em); //eman2
                        VolumeData(int sizeX, int sizeY, int sizeZ);
                        VolumeData(int sizeX, int sizeY, int sizeZ, float val);
                        VolumeData(int sizeX, int sizeY, int sizeZ, int offsetX, int offsetY, int offsetZ, VolumeData * data);
                        VolumeData(VolumeData& obj); //eman2
                        ~VolumeData();
 
                //Member functions
                        int GetSize(int dimension);
                        int GetSizeX();
                        int GetSizeY();
                        int GetSizeZ();
                        float GetSpacing(int dimension);
                        float GetSpacingX();
                        float GetSpacingY();
                        float GetSpacingZ();
                        float GetOrigin(int dimension);
                        float GetOriginX();
                        float GetOriginY();
                        float GetOriginZ();
                        float GetDataAt(int x, int y, int z);
                        float GetDataAt(int index);
                        int GetIndex(int x, int y, int z);
                        int GetMaxIndex();
 
                        void SetSpacing(float spacingX, float spacingY, float spacingZ);
                        void SetOrigin(float originX, float originY, float originZ);
                        void SetDataAt(int x, int y, int z, float value);
                        void SetDataAt(int index, float value);
                        void Pad(int padBy, double padValue);
                        EMData * get_emdata(); //eman2
                private:
                        void InitializeVolumeData(int sizeX, int sizeY, int sizeZ, float spacingX, float spacingY, float spacingZ, float originX, float originY, float originZ, bool initializeData, float val);
                        void SetSize(int sizeX, int sizeY, int sizeZ);
 
                //Member variables
                public:
                        bool owns_emdata; //eman2
                private:
                        EMData * emdata; //eman2
                        
                };
 
 
        }
}
 
 
#endif