Differences between revisions 117 and 122 (spanning 5 versions)
Revision 117 as of 2017-07-29 05:54:29
Size: 4382
Editor: SteveLudtke
Comment:
Revision 122 as of 2017-09-06 07:12:32
Size: 5368
Editor: SteveLudtke
Comment:
Deletions are marked like this. Additions are marked like this.
Line 15: Line 15:
==== Short tutorials and info sheets ====

---- /!\ '''Edit conflict - other version:''' ----

---- /!\ '''Edit conflict - other version:''' ----
 * [[attachment:image_info.pdf|Information about images]]
 * [[image_proc.pdf|Filtering and basic image processing]]
 * [[ctf_sim.pdf|CTF Simulator]]

---- /!\ '''Edit conflict - your version:''' ----
 * [[attachment:image_info.pdf|Information about images]]
 * [[attachment:image_proc.pdf|Filtering and basic image processing]]
 * [[attachment:ctf_sim.pdf|CTF Simulator]]

---- /!\ '''End of edit conflict''' ----


---- /!\ '''Edit conflict - other version:''' ----
---- /!\ '''Edit conflict - your version:''' ----
 * [[attachment:image_info.pdf|Information about images]]
 * [[attachment:image_proc.pdf|Filtering and basic image processing]]
 * [[attachment:ctf_sim.pdf|CTF Simulator]]

---- /!\ '''End of edit conflict''' ----


---- /!\ '''Edit conflict - your version:''' ----

---- /!\ '''End of edit conflict''' ----
Line 31: Line 60:
 * [[EMAN2/Programs/convnet_pickparticle|tutorial for the experimental Neural network picker]] (requires CUDA for good performance)  * [[EMAN2/Programs/convnet_pickparticle|tutorial for the Neural network particle picker]] (requires CUDA for good performance)
Line 36: Line 65:
==== Single particle tomography (SPT) - 3D particles, also called subtomogram averaging ==== ==== Single particle tomography (SPT) - subtomogram averaging - 3D Particles ====

EMAN2 TUTORIALS

Beginners (introductory tutorials)

Please note that we are continuously developing and updating the tutorials. Items that are greyed out are planned but the tutorials have not yet been completed. Most tutorials include the necessary data. If you have a request for a particular tutorial please feel free to email sludtke@bcm.edu.

Video tutorials and discussions

Written Tutorials

Short tutorials and info sheets


/!\ Edit conflict - other version:



/!\ Edit conflict - other version:



/!\ Edit conflict - your version:



/!\ End of edit conflict



/!\ Edit conflict - other version:



/!\ Edit conflict - your version:



/!\ End of edit conflict



/!\ Edit conflict - your version:



/!\ End of edit conflict


Single particle analysis (SPA) - 2D particles

Single particle tomography (SPT) - subtomogram averaging - 3D Particles

BOTH the tutorial in .pdf format and the data needed for the tutorial in a .zip file are provided in the page linked below:

Automated Cellular Tomogram Annotation using Neural Networks

Using the Built-In Modules from Other Software

Out of date tutorials (provided for data access, etc.)

Advanced (EMAN2 through the ''e2.py'' Python prompt)

* Generate and display an EMAN2 test image

* Rotate, translate, scale or mirror an image

* Add and multiply images, add and multiply by constants

* Convert a real/imaginary image into an amplitude/phase image and vice versa

* Iterate through the pixels of an image

* Make a projection of a 3D model, project through the asymmetric unit

2d_image_3dplot_2.png

* Change log level in EMAN2

EMAN2/Tutorials (last edited 2024-04-05 01:51:27 by MuyuanChen)