EMAN2
amiraio.h
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1/*
2 * Author: Steven Ludtke, 04/10/2003 (sludtke@bcm.edu)
3 * Copyright (c) 2000-2006 Baylor College of Medicine
4 *
5 * This software is issued under a joint BSD/GNU license. You may use the
6 * source code in this file under either license. However, note that the
7 * complete EMAN2 and SPARX software packages have some GPL dependencies,
8 * so you are responsible for compliance with the licenses of these packages
9 * if you opt to use BSD licensing. The warranty disclaimer below holds
10 * in either instance.
11 *
12 * This complete copyright notice must be included in any revised version of the
13 * source code. Additional authorship citations may be added, but existing
14 * author citations must be preserved.
15 *
16 * This program is free software; you can redistribute it and/or modify
17 * it under the terms of the GNU General Public License as published by
18 * the Free Software Foundation; either version 2 of the License, or
19 * (at your option) any later version.
20 *
21 * This program is distributed in the hope that it will be useful,
22 * but WITHOUT ANY WARRANTY; without even the implied warranty of
23 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
24 * GNU General Public License for more details.
25 *
26 * You should have received a copy of the GNU General Public License
27 * along with this program; if not, write to the Free Software
28 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
29 *
30 * */
31
32#ifndef eman__amiraio_h__
33#define eman__amiraio_h__ 1
34
35#include "imageio.h"
36
37namespace EMAN
38{
39
48 class AmiraIO : public ImageIO
49 {
50 public:
51 AmiraIO(const string & fname, IOMode rw_mode = READ_ONLY);
52 ~AmiraIO();
53
55 static bool is_valid(const void *first_block);
56
57 private:
60 int nx;
61 int ny;
62 int nz;
63 float pixel; // A/pixel (or voxel)
64 float xorigin, yorigin, zorigin; // the origin coordinates in Angstrom for the first pixel (0,0,0).
65
66 static const char *MAGIC;
67 };
68
69}
70
71
72#endif //eman__amiraio_h__
Amira file = ASCII header + binary data.
Definition: amiraio.h:49
float xorigin
Definition: amiraio.h:64
DEFINE_IMAGEIO_FUNC
Definition: amiraio.h:54
AmiraIO(const string &fname, IOMode rw_mode=READ_ONLY)
Definition: amiraio.cpp:48
EMUtil::EMDataType dt
Definition: amiraio.h:59
static const char * MAGIC
Definition: amiraio.h:66
float pixel
Definition: amiraio.h:63
float yorigin
Definition: amiraio.h:64
bool is_big_endian
Definition: amiraio.h:58
float zorigin
Definition: amiraio.h:64
static bool is_valid(const void *first_block)
Definition: amiraio.cpp:100
EMDataType
Image pixel data type used in EMAN.
Definition: emutil.h:92
ImageIO classes are designed for reading/writing various electron micrography image formats,...
Definition: imageio.h:127
IOMode rw_mode
Definition: imageio.h:353
E2Exception class.
Definition: aligner.h:40