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| ||EMAN2||Multi task image processing||Used throughout the workshop.|| ||SPARX||Multi task Image processing||Software comes with EMAN2 distro, demo data for day 3|| ||Chimera||Visualization/Interactive post procesing||Used throughout|| ||Frealign||Single particle refinement||EMAN2 integration tutorial/demo on day 2|| ||Gorgon||Model building, secondary structure detection||Tutorial on day 4|| ||Rosetta||High resolution model building||Used for intro on day 4|| ||Segger||Interactive segmentation||Distributed with Chimera, used on Day4|| |
||[[Ws2011/Eman2|EMAN2]]||Multi task image processing||Used throughout the workshop.|| ||[[Ws2011/Chimera|Chimera]]||Visualization/Interactive post procesing||Used throughout|| ||[[Ws2011/Frealign|Frealign]]||Single particle refinement||EMAN2 integration tutorial/demo on day 2|| ||[[Ws2011/Gorgon|Gorgon]]||Model building, secondary structure detection||Tutorial on day 4|| ||[[Ws2011/Rosetta|Rosetta]]||High resolution model building||Used for intro on day 4|| ||[[Ws2011/Segger|Segger]]||Interactive segmentation||Distributed with Chimera, used on Day 3|| ||[[Ws2011/DireX|DireX]]||Dynamic modeling||Demo on day 4|| ||[[Ws2011/Emen2|EMEN2]]||Database/Electronic Notebook||Demo/tutorial on Day 4|| Data only: ||SPARX||Software comes with EMAN2 distro, demo data for day 3|| ||Single particle tomography||EMAN2 used for processing. Tutorial day 3|| ||Helical processing||EMAN2 used for processing|| |
Material for NCMI 2011 Workshop on CryoEM Single Particle Analysis
This page will house links to the various software and sample data sets for the workshop. It is currently being constructed.
- If you are a speaker, please follow the below template and create a page for your session.
- if you are a participant, please do NOT begin downloading items on this page, as they may still change significantly. I will make an email announcement when the site is ready.
Required software/data:
Multi task image processing |
Used throughout the workshop. |
|
Visualization/Interactive post procesing |
Used throughout |
|
Single particle refinement |
EMAN2 integration tutorial/demo on day 2 |
|
Model building, secondary structure detection |
Tutorial on day 4 |
|
High resolution model building |
Used for intro on day 4 |
|
Interactive segmentation |
Distributed with Chimera, used on Day 3 |
|
Dynamic modeling |
Demo on day 4 |
|
Database/Electronic Notebook |
Demo/tutorial on Day 4 |
Data only:
SPARX |
Software comes with EMAN2 distro, demo data for day 3 |
Single particle tomography |
EMAN2 used for processing. Tutorial day 3 |
Helical processing |
EMAN2 used for processing |