Diff for "Workshop2011"

Differences between revisions 3 and 4

Material for NCMI 2011 Workshop on CryoEM Single Particle Analysis

This page contains links to the software and data you need to download for each of the specific tutorials at the workshop. People using the on-site desktop PCs do not need to install anything in advance, unless they wish to do something on their laptops as well.

Pleae note: You will need to have everything installed and working on your laptop before the workshop. We are happy to help you with installation/setup problems via email before the workshop, but we cannot individually help 90+ laptop users AT the workshop with installation problems. If you do not wish to participate in one or more of the tutorials below, you can, of course, skip that section.

Required software/data:

EMAN2	General purpose image processing and refinement	Used throughout the workshop.
Chimera	Visualization/Interactive post procesing	Used throughout the workshop.
Frealign	Single particle refinement	EMAN2/Frealign tutorial on day 3
Gorgon	Model building, secondary structure detection	Tutorial on day 4
Rosetta	High resolution model building	Used for mini-tutorial on day 4
Segger	Interactive segmentation	Brief demo/tutorial Day 3
DireX	Dynamic modeling	Demo on day 4
EMEN2	Database/Electronic Notebook	Demo/tutorial on Day 4

Data only:

SPARX	SPARX software comes with EMAN2 installation, demo data for day 3
Single particle tomography	EMAN2 used for processing. Tutorial day 3
Helical processing	EMAN2 used for processing

-  ⇤ ← Revision 3 as of 2011-01-30 18:47:24 → 
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+   ← Revision 4 as of 2011-03-08 04:18:28 → ⇥
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-This page will house links to the various software and sample data sets for the workshop.
It is currently being constructed.
+This page contains links to the software and data you need to download for each of the specific
tutorials at the workshop. People using the on-site desktop PCs do not need to install anything in advance,
unless they wish to do something on their laptops as well.
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- * If you are a speaker, please follow the below template and create a page for your session.
 * if you are a participant, please do NOT begin downloading items on this page, as they may still change significantly. I will make an email announcement when the site is ready.
+Pleae note: You will need to have everything installed and working on your laptop before the workshop. We are happy
to help you with installation/setup problems via email before the workshop, but we cannot individually help 90+
laptop users AT the workshop with installation problems. If you do not wish to participate in one or more of
the tutorials below, you can, of course, skip that section.
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-||[[Ws2011/Eman2|EMAN2]]||Multi task image processing||Used throughout the workshop.||
||[[Ws2011/Chimera|Chimera]]||Visualization/Interactive post procesing||Used throughout||
||[[Ws2011/Frealign|Frealign]]||Single particle refinement||EMAN2 integration tutorial/demo on day 2||
+||[[Ws2011/Eman2|EMAN2]]||General purpose image processing and refinement||Used throughout the workshop.||
||[[Ws2011/Chimera|Chimera]]||Visualization/Interactive post procesing||Used throughout the workshop.||
||[[Ws2011/Frealign|Frealign]]||Single particle refinement||EMAN2/Frealign tutorial on day 3||
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-||[[Ws2011/Rosetta|Rosetta]]||High resolution model building||Used for intro on day 4||
||[[Ws2011/Segger|Segger]]||Interactive segmentation||Distributed with Chimera, used on Day 3||
+||[[Ws2011/Rosetta|Rosetta]]||High resolution model building||Used for mini-tutorial on day 4||
||[[Ws2011/Segger|Segger]]||Interactive segmentation||Brief demo/tutorial Day 3||
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-||[[Ws2011/Sparx|SPARX]]||Software comes with EMAN2 distro, demo data for day 3||
+||[[Ws2011/Sparx|SPARX]]||SPARX software comes with EMAN2 installation, demo data for day 3||