Material for NCMI 2011 Workshop on CryoEM Single Particle Analysis

This page will house links to the various software and sample data sets for the workshop. It is currently being constructed.

Required software/data:

EMAN2

Multi task image processing

Used throughout the workshop.

Chimera

Visualization/Interactive post procesing

Used throughout

Frealign

Single particle refinement

EMAN2 integration tutorial/demo on day 2

Gorgon

Model building, secondary structure detection

Tutorial on day 4

Rosetta

High resolution model building

Used for intro on day 4

Segger

Interactive segmentation

Distributed with Chimera, used on Day 3

DireX

Dynamic modeling

Demo on day 4

EMEN2

Database/Electronic Notebook

Demo/tutorial on Day 4

Data only:

SPARX

Software comes with EMAN2 distro, demo data for day 3

Single particle tomography

EMAN2 used for processing. Tutorial day 3

Helical processing

EMAN2 used for processing